Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01561 ATGTCTTTTTCCCTCATTGACTCATGCAAGAAGAGAAAACGATGGCCCAAGATTTTCAGATTACACTCTTTTGCAGACCCAGGTTGTCCCATTGCACCTTCGGGTCCTTTCCGTGAAAACATTCGAATCTTTCTTCAAGAAGCTGGTGAACTTGAAGATTACAAGGTTATGGGTAATCCCATTTGGTGCACTCTTCTCATTCATGAAAAGACCAATCTAATGGCTCCTTTTTACACACTTGAAGAGGAAGTTTATGGCTCTTCTCATCCTTTCTGTGATCATTGTCGCTGTGTAGGTTGGAGTGGTCATTTTGTATCAAAAAGAAGGTATCATTTCATAATCCCAATGGACAATGGGTGGCATAAACCTTTAAATGAAGAATCTCTTGATAATCAAAGTCATCTATTGCATGGTGTGATTCATTGCAATGGTTATGGTCATTTGCTCTGTCTTAATGGCATTGAAGGGGGTTCCAAAATTCTAAGTGGTAGAGAGATCATGGATCTATGGGACAGAATTTGCACCAATCTTCGAGCAAGGCAAATTGCAGTGGAAGATGCATCAAGGAAAAGGTCAATGGATCTTCGATTACTTCATGGAGTTGCCTATGGCCACTCATGGTTTGGTAGATGGGGCTATAAGTTTTGCCGTGGAAGCTTTGGTGTGACAGAACAAAACTACTATGAAGCAATTGAAACTCTTGGCTCATTAGTGCTAGATGAGATAATAAGAGATTTGAGTAAGACAAAGTACCATAAAGATATCAAACAAATGGTTCGTTGCTATAGAGATTTGAGTGAAACTCATATCATCACAATAAGGGAGCTTCTTAGATTCATGCTCACTGTCAAATCTCGTGGACCTGTTTCTAAGATAACAGTAActtcttctgctaaatctgtttcatcttcatctccttctacttcAGCATTTATGTCTAGAAATTCAATCAAACATGCTGTTTCAAGTTCTATGAAGGAAAAATCAGCAAGGTATAAGAAATTCAGCACTGCAGTGGCTAATATGGATAGTAGGTGGCCAACAAGAAGACTAGAGTTTGCAGCTCAAGTGATTGTTGATGCATTAAAAGAAGACAAAGCTATGAAATCAGGTTCTAGTGGAATGACAAGACAAGATGTTAGGGATGCAGCTAGGCTTCACATTGGTGACACAGGTTTACTTGATTATGTGCTGAAATCATTAAACAATGTGATTGTTGAAAACTACGTCGTTCGCCGCATGGTTAACCCTTCAACAAGGATCCTTGAGTACACAATTCATGAGCTTGGGAAAGGGTTCAAAGCACCAACTGAAGTTGAACATGGTGTAATGACAGTTAAAGATAATCCTCAAAAGGATTCATCGTTGTCATCGTCGACATCATCTTGGATTCCTGGTAATGATGTTTACAGTGATGTAGTTTTTCTCTACAAGAATGTATTGTTGTGTTATCCAGATTCGGAAGTGGTGGAATTAGCAGTGCAAACAATACTTGACTGCAGACACTTTGTGAAAGAGTGGAAATTAAGAGATGAAATGGAACAAGTTCTGACATTTATTTGTCATTTGAAACCAAATTTTGTTGAGAATAAATCTGAGTTAAAAGGGCCATCTTGTGGTGAAATTGTAATTGTTCCACTTCATGCAACTGTTAGAGACTTGAAGCAAGCTGCTGAGGCTACATTAAGGGACACCTATTGCATAGCAGAGAGACTTATAGTAACTGATATCAAAGAATTGTTGGGTGTGAGTGATGAAGAAGTGCTCTTTGGATTGATACAATCAGGTGTGAAGCTTTGTGTTAGAGGAATTGGTATAGATTTGTGCACACCATTGAAATATCAAGGTGGTTCTGATAATTGGAAAGTGAGGTGTGAATGTGGAGCTCAAGATGATGATGGAGAGAGAATGGTAGCTTGTGATATTTGTGAAGTGTGGCAGCATACACGTTGTTGTGGTATCGATGATTCCGAGACAGTGCCACCATTGTTTGTTTGTTCTGGTTGTTGTGATTCACTTGTGCCACCAAGAGTTGAAACTAGCAACTATGCTATAGATTGTGCTGATGATTTTTTGATTTCACCTGAGCCTACTCACTTGCTTGAGTATGCATATGGATACTGA 2124 0.3828 MSFSLIDSCKKRKRWPKIFRLHSFADPGCPIAPSGPFRENIRIFLQEAGELEDYKVMGNPIWCTLLIHEKTNLMAPFYTLEEEVYGSSHPFCDHCRCVGWSGHFVSKRRYHFIIPMDNGWHKPLNEESLDNQSHLLHGVIHCNGYGHLLCLNGIEGGSKILSGREIMDLWDRICTNLRARQIAVEDASRKRSMDLRLLHGVAYGHSWFGRWGYKFCRGSFGVTEQNYYEAIETLGSLVLDEIIRDLSKTKYHKDIKQMVRCYRDLSETHIITIRELLRFMLTVKSRGPVSKITVTSSAKSVSSSSPSTSAFMSRNSIKHAVSSSMKEKSARYKKFSTAVANMDSRWPTRRLEFAAQVIVDALKEDKAMKSGSSGMTRQDVRDAARLHIGDTGLLDYVLKSLNNVIVENYVVRRMVNPSTRILEYTIHELGKGFKAPTEVEHGVMTVKDNPQKDSSLSSSTSSWIPGNDVYSDVVFLYKNVLLCYPDSEVVELAVQTILDCRHFVKEWKLRDEMEQVLTFICHLKPNFVENKSELKGPSCGEIVIVPLHATVRDLKQAAEATLRDTYCIAERLIVTDIKELLGVSDEEVLFGLIQSGVKLCVRGIGIDLCTPLKYQGGSDNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCSGCCDSLVPPRVETSNYAIDCADDFLISPEPTHLLEYAYGY 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01561 707 SUPERFAMILY FYVE/PHD zinc finger 617 676 IPR011011 -
Car02g01561 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 677 - -
Car02g01561 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 612 673 IPR013083 -
Car02g01561 707 ProSitePatterns Zinc finger PHD-type signature. 625 669 IPR019786 -
Car02g01561 707 SMART PHD_3 624 670 IPR001965 -
Car02g01561 707 CDD PHD_MMD1_like 625 669 - -
Car02g01561 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01561 Car-Chr2 43332208 43335321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01561 10 675 PHD Transcription Factor Family AT5G22260 32.581 1.30e-118 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01561 - - mtr:MTR_5g077750 1237.63