Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01560 ATGATCGAGATGAaggagaggacaaaggaagaggaaaatgaagaagaagagaaaAACGGGATTAAGAAAACGACGTCGTGTTCGAGatcatcatcatcatcatcatcttcTGCGGATGAAAGAGAGTATCGGGTTCAGGATCTTAGGGATCGATTGAAATCATCAAGAGGAAGCAGGTTTAATTTGATAGAGATAGAGTTGGGGCTATCCATTGGTTGGAGAAAGTTCAGTCGTCAAGCTCTTTTTCATGAATTTGTTATTCATCCTAATAACCGGTGGTATCGGACATGGATCAAATTCATATTATTATGGGCAGTGTACTCATCTTTCTTCACCCCAATGGAGTTTGCATTCTTTCGTGGCCTGCCAGAGAATCTTTTTATACTGGACATTATAGGACAAATAGCTTTTCTTGTAGACATTGTTTTGCAGTTCTTCGTAGCTTATAGAGACAGTCAGACCTACCGCATGGTCTACAAGCGAACTCCTATTGCTCTAAAGTATCTAAAATCTAGCTTTGTCATTGATCTTTTAGGATGTATGCCCTGGGACCTCATCTACAAGGCTTGTGGACGGAGAGAGGAAGTTAGGTACCTTTTGTGGATCAGATTATATAGGGCGCAGAGAGTTGTACATTTTTTCAGGAATTTGGAGAAAGACATACGTGTGAATTACATTATTGCTCGGATTGTGAAACTTTTAGTAGTTGAACTCTACTGCACTCACACAGCAGCCTGCATTTTCTACTATTTGGCTACTACACTACCTGAATCCCAAGAAGGTTACACATGGATAGGAAGTTTGAAACTAGGTGACTATAGTTATTCTAATTTTAGAGAAATTGATCTTTGGAAGCGCTACACGACATCGATGTATTTTGCTATTGTTACAATGGCTACTGTTGGCTATGGAGACATACATGCAGTAAATTTGAGGGAGATGATATTCATAATGATTTATGTTTCATTTGACATGGTTCTTGGTGCTTATTTGATTGGTAACATGACAGCTTTGATAGTCAAGGGATCAAAGACTGAAAAGTTTAGGGACAGGATGACAGATCTGATGAAATATATGAATAGAAATAAACTTGGTAGGGATATCCGTGAACAAATAAAGGGCCATGTGCGCTTGCAGTTCGAGAGCAGCTACACTGACGCTTCTGTCATTCAGGACATTCCCATTTCTATTCGATCTAAGATATCCCAATCGTTGTATTTGCCATACATTGAAAAAGTTTCTCTTTTTAGAGGTTGCTCTTCAGAATTCATCAATCAAATTGTTACTAGGCTCCATGAGGAGTTCTTTCTTCCCGGGGAAGTTATACTGGAACAAGGAAATGTTGTAGATCAACTATATTTTGTCTGTGATGGTGTGTTGGAGGAAGTAGGCATAGCTGAAGATGGGTCTGAAGAAACTGTTTCACTTCTACAGCCCAACAGTTCATTTGGAGAAATATCTATTCTTTGCAACATTCCTCAGCCACATACTGTTCGCGTTTGTGAACTGTGTAGGGTCCTGCGGCTTGATAAACAATCATTTACAAATATCCTTGATATATACTTTTATGATGGGAAGAAAGTATTAGACAACCTTCTAGTGGGAAAAGAGTCTATTCGAGGTAAGCAATTGGAGTCAGACATCTCATTTCATATCGGAAAGCTAGAATCTGAACTTGCTTTGAAGGTCAATAGAGCAGCTTTTGACGGGGATATGTATCAGCTAAAAAGCATGATTCGAGCTGGAGCTGATCCCAACAAGACAGATTATGATGGAAGATCACCTTTGCATCTTGCAGCATGCAGAGGATATGAAGATATCATAGTTCTCCTTCTTCATAAAGGTGTAGACATCAACGTCAAAGATAACTTTGGGAACACACCGCTACTTGAAGCAGTTAAGAATGGCCATGATCGGGTTGCTTCTTTACTTGTTAGAGAAGGGGCCTCGATGAGGATAGAAAATGGTGGTAGTTTTCTATGCACAGCAGTTGCAAGAGGTGATTCGGATTATCTTAAAAGGCTTTTATCTAATGGAGTGGATCCTAACTTGAAAGATTACGACTATCGAACCCCTCTACATGTTGCTGCATCTGAAGGTTTAATCTTCATGGCAAAGTTGCTATTAGACGCCGGAGCTAGTGTTTTTACCAAAGACAGATGGGGAAATACCCCACTTGATGAAGCCCGGATGAGTGGAAATAAGAATCTGATAAAGCTCCTAGAAGATGCAAAATCTGCTCAATTGTCAGCGTTCCCTTGTTCCCAAGAAATTACAGATAAAGTACATCCTAAGAAGTGCACAGTGTTCCCTTTCCACCCGTGGGATCCAAAAGAGCATAGAAGTAATGGAATAGTATTATGGGTTCCACACACCATTGAAGAGCTAATCAAAACAGCAGCAGAACAGATAGGATTTTCTAGTGATTCTTGTATTTTATCAGAAGATGCTGGTAAAATTATTGATGTGAGCATGATTAAGGATGATCAGAAGCTATATTTAGTCCATGAAACACATTAG 2520 0.3857 MIEMKERTKEEENEEEEKNGIKKTTSCSRSSSSSSSSADEREYRVQDLRDRLKSSRGSRFNLIEIELGLSIGWRKFSRQALFHEFVIHPNNRWYRTWIKFILLWAVYSSFFTPMEFAFFRGLPENLFILDIIGQIAFLVDIVLQFFVAYRDSQTYRMVYKRTPIALKYLKSSFVIDLLGCMPWDLIYKACGRREEVRYLLWIRLYRAQRVVHFFRNLEKDIRVNYIIARIVKLLVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKLGDYSYSNFREIDLWKRYTTSMYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTEKFRDRMTDLMKYMNRNKLGRDIREQIKGHVRLQFESSYTDASVIQDIPISIRSKISQSLYLPYIEKVSLFRGCSSEFINQIVTRLHEEFFLPGEVILEQGNVVDQLYFVCDGVLEEVGIAEDGSEETVSLLQPNSSFGEISILCNIPQPHTVRVCELCRVLRLDKQSFTNILDIYFYDGKKVLDNLLVGKESIRGKQLESDISFHIGKLESELALKVNRAAFDGDMYQLKSMIRAGADPNKTDYDGRSPLHLAACRGYEDIIVLLLHKGVDINVKDNFGNTPLLEAVKNGHDRVASLLVREGASMRIENGGSFLCTAVARGDSDYLKRLLSNGVDPNLKDYDYRTPLHVAASEGLIFMAKLLLDAGASVFTKDRWGNTPLDEARMSGNKNLIKLLEDAKSAQLSAFPCSQEITDKVHPKKCTVFPFHPWDPKEHRSNGIVLWVPHTIEELIKTAAEQIGFSSDSCILSEDAGKIIDVSMIKDDQKLYLVHETH 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01560 839 ProSiteProfiles Ankyrin repeat profile. 688 720 IPR002110 GO:0005515
Car02g01560 839 Gene3D - 555 655 IPR036770 -
Car02g01560 839 Gene3D Jelly Rolls 401 531 IPR014710 -
Car02g01560 839 MobiDBLite consensus disorder prediction 1 42 - -
Car02g01560 839 SUPERFAMILY Voltage-gated potassium channels 89 340 - -
Car02g01560 839 Pfam KHA, dimerisation domain of potassium ion channel 765 834 IPR021789 -
Car02g01560 839 PRINTS EAG/ELK/ERG potassium channel family signature 130 140 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car02g01560 839 PRINTS EAG/ELK/ERG potassium channel family signature 239 249 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car02g01560 839 PRINTS EAG/ELK/ERG potassium channel family signature 287 304 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car02g01560 839 PRINTS EAG/ELK/ERG potassium channel family signature 331 340 IPR003938 GO:0005249|GO:0006813|GO:0016020
Car02g01560 839 MobiDBLite consensus disorder prediction 1 23 - -
Car02g01560 839 ProSiteProfiles cAMP/cGMP binding motif profile. 415 518 IPR000595 -
Car02g01560 839 Gene3D Helix hairpin bin 343 400 - -
Car02g01560 839 SUPERFAMILY Ankyrin repeat 565 743 IPR036770 -
Car02g01560 839 ProSiteProfiles Ankyrin repeat region circular profile. 591 623 - -
Car02g01560 839 ProSiteProfiles Ankyrin repeat region circular profile. 624 655 - -
Car02g01560 839 PANTHER POTASSIUM CHANNEL AKT1 36 838 IPR045319 GO:0005249|GO:0006813
Car02g01560 839 PANTHER POTASSIUM CHANNEL SKOR-LIKE 36 838 - -
Car02g01560 839 CDD CAP_ED 415 521 IPR000595 -
Car02g01560 839 Pfam Ion transport protein 95 340 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Car02g01560 839 SMART ANK_2a 591 620 IPR002110 GO:0005515
Car02g01560 839 SMART ANK_2a 655 684 IPR002110 GO:0005515
Car02g01560 839 SMART ANK_2a 688 717 IPR002110 GO:0005515
Car02g01560 839 SMART ANK_2a 721 751 IPR002110 GO:0005515
Car02g01560 839 SMART ANK_2a 624 653 IPR002110 GO:0005515
Car02g01560 839 ProSiteProfiles KHA domain profile. 766 839 IPR021789 -
Car02g01560 839 Gene3D - 656 751 IPR036770 -
Car02g01560 839 Pfam Ankyrin repeats (3 copies) 661 742 IPR002110 GO:0005515
Car02g01560 839 Pfam Ankyrin repeats (3 copies) 566 653 IPR002110 GO:0005515
Car02g01560 839 Pfam Cyclic nucleotide-binding domain 435 519 IPR000595 -
Car02g01560 839 SUPERFAMILY cAMP-binding domain-like 343 531 IPR018490 -
Car02g01560 839 MobiDBLite consensus disorder prediction 24 39 - -
Car02g01560 839 ProSiteProfiles Ankyrin repeat profile. 624 656 IPR002110 GO:0005515
Car02g01560 839 SMART cnmp_10 415 533 IPR000595 -
Car02g01560 839 Gene3D - 97 341 - -
Car02g01560 839 ProSiteProfiles Ankyrin repeat profile. 655 687 IPR002110 GO:0005515
Car02g01560 839 ProSiteProfiles Ankyrin repeat region circular profile. 655 686 - -
Car02g01560 839 PRINTS Ankyrin repeat signature 592 607 IPR002110 GO:0005515
Car02g01560 839 PRINTS Ankyrin repeat signature 704 718 IPR002110 GO:0005515
Car02g01560 839 ProSiteProfiles Ankyrin repeat profile. 591 623 IPR002110 GO:0005515
Car02g01560 839 ProSiteProfiles Ankyrin repeat region circular profile. 688 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01560 Car-Chr2 43311371 43325479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01560 662 741 Ion Channels AT5G37500 34.314 3.26e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01560 K21867 - gmx:100814385 1433.31