Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01552 ATGTCTCCGACTCATCCCCGCCGTGTTCACTCAAATATCTTGCTCGGATGCACCGGCGCCTCCGTCAAAATCCCAAAGCTTCATTCACAAGTTTATTATTTCCCACTAGGTCACTTACACCACGCCTCCCCTTCCCCAACCACTCACACACTCTCCATTCTCAATCGTCACCGTTCCATCATTCCTTGTCTCGTCTCCACCGTTGATCTTCTTGCTGATACTCACTCCGATGAAGTCTTTGCCAAACTTCTCCTCACTCCCGTAACTACCTTCCGTCTCCAAGAACCTCAAGATCATTCCGTTTCCGACGACGCCGATAAAGTTGTTTCATCTGTCAAGATCCTATCTCAGTCCGATGCTAATAACGGCGGTGCATTCTCCGTACCGCGCTCCTGCGCCGACACGGTCTTCCCGAAACTTAATTTCGAGGCCGTACCGCCATCTCAGGAACTCTTCATCACCGACGTTCACGGCGAAGTCTGGAAGTTTACTCACACTTTTCGCGGGAATCCTCGGCGACACTTGTTCACGACTGGATGGAGTACTTTCGTGAACAAGAAAAAACTCGTCGCCGGGGATTCGGTTGTTTTTATGAAAAACTCGACCGGAGAGATATTCGTCGGGATTCGAAGAATCATGAAATTCGAAGCCACCTCAGCTGCAGAGGTGTCAGAGGAGAACAAGGAGTTTGAGGGATTTTTGAGGAACGGGAAAAGGGGGAAAGTAACGGAGCAAGCGGTTAGAGAGGCGGCGGAATCGGCGGAGAAGAAGAATGCGTTTGAGGTTGTGTATTATCCGAGTGACGGTTGTTGGTGTGATTTTGTGGTGGATGCTAAGGTGGTTGATGAAGCTATGAAGATCGATTGGAGTTGTGGAATGAGAGTGAAGCTTTGTTTGGAGAATGATCGTGATTCTTCAAAGATGAAATTAATTCTGGGGACAATCTCTAATGTCTCTACTGCTACTCCATGGCGCATGCTTCAGGTTAACTGGGATGGAGCTGAAGTATCAGAGAATCTAAAGCAAGTGAGTCCATGGCAAGTTGAAGTTATTTCACAGATGCCTGCACTACATTTAGCATTCCCCCCAACAAAAAAGTTTAGAGCTACTCATAATTCAAGTGGCATAGAGGGATCCACTACAATACAGTTTCTTTGTTCAACAGCGAAATCCTCAAACAGAACACCTTTGAATTATGATACTTTAGATGCTAGCATAAAGGGAGTCAGGCAAAATCTTCTATCTGTATCAGATAAGGGCAATAGTTTCATTGGGGTTAATTCAGTGGCAGGATTGAGTATTGTGTCAACAGAGCTAACCCTTCACAGTTCTATATCTACTAATGACAGCTCGTCGGATACCAATATTAGTATCGATACCAAAAAGGCTACTTCCCCTTCAATTATGCTATTTGGTACCATCATACAACCTGTTCAATGTGATTTTCAAGATTCTGGTATCAAGACCTCTGATGATGAAATTCAAGATATTCACAAAGCTTGCACAAATGGGTGA 1515 0.4521 MSPTHPRRVHSNILLGCTGASVKIPKLHSQVYYFPLGHLHHASPSPTTHTLSILNRHRSIIPCLVSTVDLLADTHSDEVFAKLLLTPVTTFRLQEPQDHSVSDDADKVVSSVKILSQSDANNGGAFSVPRSCADTVFPKLNFEAVPPSQELFITDVHGEVWKFTHTFRGNPRRHLFTTGWSTFVNKKKLVAGDSVVFMKNSTGEIFVGIRRIMKFEATSAAEVSEENKEFEGFLRNGKRGKVTEQAVREAAESAEKKNAFEVVYYPSDGCWCDFVVDAKVVDEAMKIDWSCGMRVKLCLENDRDSSKMKLILGTISNVSTATPWRMLQVNWDGAEVSENLKQVSPWQVEVISQMPALHLAFPPTKKFRATHNSSGIEGSTTIQFLCSTAKSSNRTPLNYDTLDASIKGVRQNLLSVSDKGNSFIGVNSVAGLSIVSTELTLHSSISTNDSSSDTNISIDTKKATSPSIMLFGTIIQPVQCDFQDSGIKTSDDEIQDIHKACTNG 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01552 504 SMART B3_2 111 213 IPR003340 GO:0003677
Car02g01552 504 Gene3D - 110 213 IPR015300 -
Car02g01552 504 Gene3D - 288 356 - -
Car02g01552 504 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 495 IPR044835 GO:0003677|GO:0006355|GO:0009725
Car02g01552 504 CDD B3_DNA 112 211 IPR003340 GO:0003677
Car02g01552 504 Pfam Auxin response factor 250 328 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car02g01552 504 SUPERFAMILY DNA-binding pseudobarrel domain 107 213 IPR015300 -
Car02g01552 504 Pfam B3 DNA binding domain 112 211 IPR003340 GO:0003677
Car02g01552 504 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Car02g01552 504 PANTHER AUXIN RESPONSE FACTOR 6 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01552 Car-Chr2 43225989 43227738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01552 7 495 B3 DNA Binding Superfamily AT1G77850 38.819 2.84e-115 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car02g01552 B3 3.3e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01552 - - cam:101503141 983.786