Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01541 ATGGGAAGACAACCTTGTTGTGACAAAGTTGGGTTGAAGAAAGGGCCATGGACTGTAGAGGAAGACAAGAAGCTCATAAATTTCATCCTCACAAATGGCCAATGTTGTTGGAGAGCTGTCCCTAAATTGGCAGGGCTATTAAGGTGTGGAAAAAGTTGCAGACTTAGATGGACAAATTATTTGAGGCCAGATTTAAAGAGAGGACTTTTATCAGAACATGAAGAGAAAATGGTGATTGATCTCCATGCTCAACTTGGGAACAGATGGTCTAAGATTGCTTCTCATTTACCGGGTCGAACGGATAATGAAATAAAAAATCATTGGAATACTCATATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTCTCACTCACAAACCACTCTCTAATACAAGTGACCTAACACAAAATGAACCTATACAACAACAACTAAACCAACAACCTTTGACACTTGATGTTGACACCAAAGTTGAATCTAAATTTGAGGAGGTAGAGAAGCAAGAGACTTCATTTGAGTCATCAACAATCACTCAAGTCAAAGATAAAGATGAAATTATAACACCTTTATTTGACACAATGGAGCTAGTTGATGGATTTTGCATAGATGAAGTTCCAATGATAGAACCTTTTGAGATTCTAGTTTCTTCCACTTCATCCACCTCTTCATCATCTTCATCAAATTCAATTAACTTCCTTGAAGATTTTATGCTCCATGATTTTGAGTGGTCTTGTAGTAGTAatgttgatgatgttaatgatgGGGAAAGAAAGCAAGAATTTGATGCTCCTCTTAGCAACTACTCAAGAATGATCATGGATTCAGAATTTTGGGCAGATGGTTTGTTTTGA 852 0.3615 MGRQPCCDKVGLKKGPWTVEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEHEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPLTHKPLSNTSDLTQNEPIQQQLNQQPLTLDVDTKVESKFEEVEKQETSFESSTITQVKDKDEIITPLFDTMELVDGFCIDEVPMIEPFEILVSSTSSTSSSSSSNSINFLEDFMLHDFEWSCSSNVDDVNDGERKQEFDAPLSNYSRMIMDSEFWADGLF 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01541 283 Gene3D - 70 146 - -
Car02g01541 283 Gene3D - 11 67 - -
Car02g01541 283 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Car02g01541 283 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car02g01541 283 CDD SANT 16 61 IPR001005 -
Car02g01541 283 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car02g01541 283 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Car02g01541 283 PANTHER MYB TRANSCRIPTION FACTOR 1 258 - -
Car02g01541 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Car02g01541 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Car02g01541 283 SMART sant 66 114 IPR001005 -
Car02g01541 283 SMART sant 13 63 IPR001005 -
Car02g01541 283 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 258 - -
Car02g01541 283 CDD SANT 71 112 IPR001005 -
Car02g01541 283 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01541 Car-Chr2 43118981 43121670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01541 1 232 MYB Transcription Factor Family AT5G16600 62.931 1.08e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car02g01541 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01541 K09422 - gmx:100792103 399.823