Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01534 ATGGCTACTCAGGAGGTTAATAAACCTCAATCACTTCCTCCATACCCTGAGATGATAATGAAAGCACTTGAAGCACTTCATGAACCAAACGGATCAAACAAATCATCAATAACAAACTACATAGAATCAACCTATGGTGAATTACCAGAAGGCCATTCAAATCTCGTTTCACATCATCTAAACCAATTGAAAGAAAGTGGTGAGCTTGTGTTTTCGAAGAACAACTACATGAAACCTGATCCAAACGCACCACCAAAGAGAGGACGTGGAAGACCCCCTAAACCTAAAGATCCATTGGCCCCACTTGCCACAACTGTTTTGTCCCCACCAAGACCTAGAGGTCGTCCTCCAAAGGACCCTAATGCATCACCTAAACCTAAGGTTTCTTCTGGAAGTGGTAGGCCAAGAGGTAGACCTAAGAAGATTGCAAGGACTGAGGAttctgtttctgtttcagcttcagcttcagcttcaggtgcttcttctgttgctgatgttggtgtttcaggtggtacttctgttgctgctgttcctgttgctCCAAGTGGGAAACCAAGAGGTAGGCCTCCTAAGGTGAAACCTCAAATGACAGAAGTCAGTGTTGAATCATAA 612 0.3644 MATQEVNKPQSLPPYPEMIMKALEALHEPNGSNKSSITNYIESTYGELPEGHSNLVSHHLNQLKESGELVFSKNNYMKPDPNAPPKRGRGRPPKPKDPLAPLATTVLSPPRPRGRPPKDPNASPKPKVSSGSGRPRGRPKKIARTEDSVSVSASASASGASSVADVGVSGGTSVAAVPVAPSGKPRGRPPKVKPQMTEVSVES 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01534 203 PANTHER HMG-Y-RELATED PROTEIN A 1 199 IPR031059 GO:0003677|GO:0005634
Car02g01534 203 SUPERFAMILY "Winged helix" DNA-binding domain 8 87 IPR036390 -
Car02g01534 203 SMART AT_hook_2 110 122 IPR017956 GO:0003677
Car02g01534 203 SMART AT_hook_2 133 145 IPR017956 GO:0003677
Car02g01534 203 SMART AT_hook_2 183 195 IPR017956 GO:0003677
Car02g01534 203 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Car02g01534 203 PRINTS High mobility group protein (HMGY) signature 84 96 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Car02g01534 203 PRINTS High mobility group protein (HMGY) signature 122 141 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Car02g01534 203 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car02g01534 203 PANTHER HISTONE H1 1 199 - -
Car02g01534 203 MobiDBLite consensus disorder prediction 147 168 - -
Car02g01534 203 Pfam linker histone H1 and H5 family 13 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car02g01534 203 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car02g01534 203 Pfam AT hook motif 110 121 IPR017956 GO:0003677
Car02g01534 203 Pfam AT hook motif 133 143 IPR017956 GO:0003677
Car02g01534 203 Pfam AT hook motif 86 94 IPR017956 GO:0003677
Car02g01534 203 Pfam AT hook motif 183 194 IPR017956 GO:0003677
Car02g01534 203 MobiDBLite consensus disorder prediction 66 203 - -
Car02g01534 203 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
Car02g01534 203 PRINTS AT-hook-like domain signature 108 119 IPR017956 GO:0003677
Car02g01534 203 PRINTS AT-hook-like domain signature 131 141 IPR017956 GO:0003677
Car02g01534 203 Gene3D - 7 89 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01534 Car-Chr2 43038275 43039648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01534 18 80 Single Myb Histone (SMH) Gene Family AT1G49950 39.683 6.46e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01534 - - mtr:MTR_5g078330 243.817