Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01518 ATGAAACCAAACATTGATCTTGAAGTGGAAGCTTATATAGAATATTATGAAGCAGAAGTTACCAGCCAAGTTGCTTCCAATGTATCATCAACACAAGAAACCTCAAGAAACTCTTCCATCACAACAAATCCAATAGATATCAATAATCATCCTAATTTAAATGATATATCTCTTGACTTAACTCTAAATTTCAAGAACAATGAGTTATTAGGAACATCAAAAGATTCAATAGGATTAATCTCAGTCTCAAGCACTTCTGAGAGCAGCAATGAACCTGCTAACACTGTGTCACAAACTACTTCAGCAACCATTCCAAGAGTTTTCTCATGCAATTACTGTCAAAGAAAGTTTTTCAGCTCACAAGCTCTTGGTGGACACCAAAATGCACACAAAAGAGAAAGAACATTAGCAAAAAGAGCTATGAGAATTGGATTGTTTTCTGAAAGGTATGCTAGTTTAGCTTCATTACCTTTGCATGGTTCTTTTAGATCATTAGGAATAAAAGCACACTCTTCAATGCTCCATGGATTTTCACCACCAACAATTAGTAGGCCTTTTCCTCATGAGGTGAAAAACAATACAAGATTTGATGATGAACAAGTTTGTGTTGGACTACCGATATTCGTTGAAGATGAAGAGTCGGAGTTGTTGTGGCCCGGTAGTTTTCGACCGGCGTCTGGTGATAGAGAACAGAATTTCATACTCAGTGGAAATTCAGGTTTGAGTTTTGCTACTGAGTTGGATCTGAAACGGAAAATGGCAGAGAACCAAAACGGAGTAGTTGTagaagaagaacagagcttcaacaacgagaacaagaagaagaaaacgacaaCGGAAAACATATACGACGTCGTTCATAGTCTAATATCCGAACCCTCTTATACCGCAACTCGGATCAAAACCTCTCTCTCTCCTTTCATCCCCGAAGCTTCTAGAAACTACTCTCGACGCCTTCTTCTCTGGTCTCGTCAAGGCTCTCCCCTCCGCCCTCTCCttctaatttcgGTTGGGACAATTGCTCTTGTTGCCTTGACAGGACTCCTTACCTTTCTGCTTGTCATTCTTGTTGCAACTATCAATGCCATTATTGTCTCCCTTCTCATTTCTTTGGCTGTAGCTGGAGGATTCTTGGCTCTTTTTTTCGCTTTAGTGACTGCAATATATATCGGAGCATTATCAGTAGCCATATTTGCTATTTCCACAGTTACATTTTGGGCAACCGTGGCTATTGTGATTACTACAGGATGGGTTGGATTCTTTTATACTGTATATTTGGTAACTAGAAAGAGCCTTGGATTTGCAAAACACTCATTAAGTGCGACTGGCTCTGCTGTTTCAACTTATTCTTCTGCTTGGGGTAGCCGCAACCTTTTACACAAACATTCCGATTAG 1395 0.3806 MKPNIDLEVEAYIEYYEAEVTSQVASNVSSTQETSRNSSITTNPIDINNHPNLNDISLDLTLNFKNNELLGTSKDSIGLISVSSTSESSNEPANTVSQTTSATIPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRIGLFSERYASLASLPLHGSFRSLGIKAHSSMLHGFSPPTISRPFPHEVKNNTRFDDEQVCVGLPIFVEDEESELLWPGSFRPASGDREQNFILSGNSGLSFATELDLKRKMAENQNGVVVEEEQSFNNENKKKKTTTENIYDVVHSLISEPSYTATRIKTSLSPFIPEASRNYSRRLLLWSRQGSPLRPLLLISVGTIALVALTGLLTFLLVILVATINAIIVSLLISLAVAGGFLALFFALVTAIYIGALSVAIFAISTVTFWATVAIVITTGWVGFFYTVYLVTRKSLGFAKHSLSATGSAVSTYSSAWGSRNLLHKHSD 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01518 464 PANTHER PROTEIN, PUTATIVE-RELATED 267 464 - -
Car02g01518 464 SUPERFAMILY beta-beta-alpha zinc fingers 106 135 IPR036236 -
Car02g01518 464 Gene3D Classic Zinc Finger 83 152 - -
Car02g01518 464 PANTHER VOLTAGE-DEPENDENT L-TYPE CALCIUM CHANNEL SUBUNIT 267 464 - -
Car02g01518 464 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Car02g01518 464 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01518 Car-Chr2 42481735 42486446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01518 106 234 C2H2 Transcription Factor Family AT1G66140 49.693 5.27e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car02g01518 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01518 - - gmx:100788768 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00031 06 404507 404860 Car02g01518 02 42481735 42486446 PCT