Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01504 ATGTCACTTCCTTCATTCTTCACAACATTAACAATCTTCCTCATTACACTAACATCAACAAAAAAAGTAACCTCTCATTATTCCTCTTCATCTTCTCAACAACCACCTTATCTCCAATCCTCACCTTCCTTCACCGAATGGCGATCTGCACGCGCGACCTACTACGCTGCCGCGGATCCACGCGACACAGTAGGCGGCGCGTGTGGCTACGGCGACCTAACGAAAGCCGGTTACGGCATGGCGACGGTAGGACTTAGTGAATCTTTGTTCGAAAGAGGTCAGATCTGTGGCGCGTGCTTTGAATTACGGTGTGTGGAGGATATGCGGTGGTGTTTACCTGGAACTTCGATTATTGTTACTGCGACTAATTTCTGTGCGCCGAACTATGGGTTTACGTCGGAGGGTGGTGGACATTGTAATCCTCCTAATAAGCATTTTGTTCTTCCTATTGATGCTTTTGAGAAGATTGCTATATGGAAAGCTGGTAACATGCCTCTTCAGTATCGTAGGATAAAGTGCAGAAGGGAAGGTGGAATTCGATTTACAGTCACTGGTTCTGGTATCTTCGTTTCAGTGCTGATCAGCAATGTTGCTGGCCACGGAGACATCATTGCGGTGAAGGTTAAAGGCTCAAGAACAGGTTGGCTTCCAATGGGTCGGAATTGGGGTCAAAACTGGCATATAAGCGCATTACTGCAGAATCAACCTCTTTCATTTGAGGTTACTAGTAGCGATGGGAAAACAGTTACGTCTTACAACGTTGCTCCCAAGGATTGGAGTTTTGGACAAACATTTGAAGGCAAGCAATTTGATACTTAA 819 0.4567 MSLPSFFTTLTIFLITLTSTKKVTSHYSSSSSQQPPYLQSSPSFTEWRSARATYYAAADPRDTVGGACGYGDLTKAGYGMATVGLSESLFERGQICGACFELRCVEDMRWCLPGTSIIVTATNFCAPNYGFTSEGGGHCNPPNKHFVLPIDAFEKIAIWKAGNMPLQYRRIKCRREGGIRFTVTGSGIFVSVLISNVAGHGDIIAVKVKGSRTGWLPMGRNWGQNWHISALLQNQPLSFEVTSSDGKTVTSYNVAPKDWSFGQTFEGKQFDT 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01504 272 SUPERFAMILY Barwin-like endoglucanases 41 196 IPR036908 -
Car02g01504 272 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Car02g01504 272 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Car02g01504 272 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576
Car02g01504 272 PRINTS Expansin/Lol pI family signature 161 177 IPR007118 GO:0005576
Car02g01504 272 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Car02g01504 272 PRINTS Expansin/Lol pI family signature 253 267 IPR007118 GO:0005576
Car02g01504 272 Gene3D - 178 270 IPR036749 -
Car02g01504 272 SMART dpbb_1 82 168 IPR007112 -
Car02g01504 272 Pfam Expansin C-terminal domain 179 256 IPR007117 -
Car02g01504 272 Gene3D - 33 174 IPR036908 -
Car02g01504 272 SUPERFAMILY PHL pollen allergen 175 267 IPR036749 -
Car02g01504 272 Pfam Lytic transglycolase 83 168 IPR009009 -
Car02g01504 272 PANTHER EXPANSIN-A13 19 271 - -
Car02g01504 272 PRINTS Expansin signature 77 91 IPR002963 GO:0009664
Car02g01504 272 PRINTS Expansin signature 104 115 IPR002963 GO:0009664
Car02g01504 272 PRINTS Expansin signature 117 127 IPR002963 GO:0009664
Car02g01504 272 PRINTS Expansin signature 136 153 IPR002963 GO:0009664
Car02g01504 272 PRINTS Expansin signature 153 166 IPR002963 GO:0009664
Car02g01504 272 PRINTS Expansin signature 177 189 IPR002963 GO:0009664
Car02g01504 272 PRINTS Expansin signature 189 210 IPR002963 GO:0009664
Car02g01504 272 PRINTS Expansin signature 224 245 IPR002963 GO:0009664
Car02g01504 272 PRINTS Expansin signature 253 269 IPR002963 GO:0009664
Car02g01504 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 178 IPR007112 -
Car02g01504 272 PANTHER EXPANSIN-A15 19 271 IPR002963 GO:0009664
Car02g01504 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 267 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01504 Car-Chr2 42285278 42288127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01504 46 272 Expansin Gene Family AT3G03220 83.260 8.26e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01504 - - gmx:100809568 465.692