Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01496 ATGGAGCAAGAACAAGGAAACCTCGAAAGCTTCTTAACATGGGCATCACAAATTGGAATTTCAGATTCAACAAACCATTCTCAACACTTTTTTTCCTGTTTGGGTCATTCCCTATGCGTTTCTATCTTCCCTCACTCTGGCGGTAGAGGTTTGGGTGCTGTGAGAGATCTTAGAAGGGGAGAGATTGTTCTGAGAGTTCCAAAATCTGCTTTAATGACTAGAGAGAGTGTTATGGAAGATAAAAAGCTCTGTATTGCTGTCAATAAGCATCCTTCTCTATCCTCAGTTCAGATATTGACTGTTTGCTTGTTATATGAAGTTGGTAAGGGAAAGACGTCAAGGTGGCATCCTTACCTCATGCATTTGCCGCAAAGTTACGACGTGCTAGCCATGTTTGGTGAATTTGAGAAAAATGCTCTGCAAGTGGATGAAGCTATTTGGATCACAGAAAAAGCTGTGCTAAAAGCCAAATCTGAATGGAAAGAAGCTCATGCCTTGATGGAAGATCTTATGTTTAAGCCTCAGCTTTTAACATTTAAGGCTTGGGTTTGGGCTGCTGCAACGATATCTTCCCGAACATTGCATATACCATGGGATGAAGCTGGTTGTTTATGCCCTGTGGGTGACTTATTTAATTACGATGCACCTGGAGAAGAGCTATCTGGTATTGAGGATGTAGATAATTTTCTATCTAACTCTTCTATCCCTGTAACCACCTTATCAAATGGAGACAAGAATATAGTTGTAGACGAAGAGCAGGTTGATTTTCATTCTCAGAGACTAACAGATGGTGGATTTGATGAAGATGCCAATGCATATTGCTTCTACGCTAGGACACATTACAAGAAAGGGGATCAGGTTCTGTTATGCTATGGAACATACACAAATTTGGAGCTTCTTGAACACTATGGATTTCTCTTACAAGGAAATCCAAATGATAAAGTTTTCATCCCTTTGGAACCTGCTATGTATACTTCTACTTCATGGTCTAAGGAATCACTCTATATTCATCATAACGGGAAACCTTCGTTCGCACTACTAGCTGCATTGCGATTGTGGGCAACCCCTCATAATAAGAGGAGGTCTGTCGGACATCTTGCGTATTCTGGTTCTCAACTGTCTGCCGACAATGAAACTTTCGTTATGAAATGGTTATTGAAAACTTGCAAAGCTGTCTTAAAGAATATGTCGACATCTATTGAAGACGACACATTACTCGTGAATGCATTGGATAGTAGTAAAGAATTTTTTACTTTCATGGAGATTGCTAAACTTATGACTTCTAAGGATGAAGTTTATACATTTTTAGAAGCTCATAATGTAACGACAGATGCACATAGTTTTACCGGTATATTGTTATCAAAAAAAGTGAGAAGGTTGATGGACAGGTGGAAATTAGCGGTTGTATGGAGGCTCAGGTATAAGAAAGTCCTTGTTGATTGTATTGCTTATTGCAATGGAATATTGGATTCTTTCATGAAATAA 1485 0.3906 MEQEQGNLESFLTWASQIGISDSTNHSQHFFSCLGHSLCVSIFPHSGGRGLGAVRDLRRGEIVLRVPKSALMTRESVMEDKKLCIAVNKHPSLSSVQILTVCLLYEVGKGKTSRWHPYLMHLPQSYDVLAMFGEFEKNALQVDEAIWITEKAVLKAKSEWKEAHALMEDLMFKPQLLTFKAWVWAAATISSRTLHIPWDEAGCLCPVGDLFNYDAPGEELSGIEDVDNFLSNSSIPVTTLSNGDKNIVVDEEQVDFHSQRLTDGGFDEDANAYCFYARTHYKKGDQVLLCYGTYTNLELLEHYGFLLQGNPNDKVFIPLEPAMYTSTSWSKESLYIHHNGKPSFALLAALRLWATPHNKRRSVGHLAYSGSQLSADNETFVMKWLLKTCKAVLKNMSTSIEDDTLLVNALDSSKEFFTFMEIAKLMTSKDEVYTFLEAHNVTTDAHSFTGILLSKKVRRLMDRWKLAVVWRLRYKKVLVDCIAYCNGILDSFMK 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01496 494 CDD SET_LSMT 47 306 - -
Car02g01496 494 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 302 409 IPR036464 -
Car02g01496 494 Gene3D - 309 488 IPR036464 -
Car02g01496 494 PANTHER PROTEIN SET DOMAIN GROUP 40 4 479 - -
Car02g01496 494 Pfam SET domain 48 292 IPR001214 GO:0005515
Car02g01496 494 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 4 479 - -
Car02g01496 494 Pfam Rubisco LSMT substrate-binding 340 478 IPR015353 -
Car02g01496 494 ProSiteProfiles SET domain profile. 36 292 IPR001214 GO:0005515
Car02g01496 494 SUPERFAMILY SET domain 8 310 IPR046341 -
Car02g01496 494 Gene3D set domain protein methyltransferase, domain 1 5 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01496 Car-Chr2 42226436 42230148 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01496 48 334 NAC Transcription Factor Family AT3G56570 22.796 3.85e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Car02g01496 SET 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01496 - - gmx:100787452 827.009