Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01482 ATGAAGCTTTCAACATCAGGAATGAGTCAGCAAGGACATGAAGGAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCATTGGTGTCCCTACCAACTGCAGGGACTCGTGTAGTTTACTTCCCTCAAGGTCATAGTGAGCAGGTTGCTGCCACAACCAACAGAGAAATTGATGGTCAAATACCGAATTACCCGAGCTTGCCGCCTCAGTTGATATGCCAACTTCATAATGTTACAATGCATGCAGATGTTGAAACTGATGAAGTGTATGCTCAAATGACACTACAGCCGTTGACTCCGCAAGAGCAGAAAGATACGTTTCTACCTATGGAATTGGGGATTCCAAGTAAGCAGCCATCAAATTATTTTTGCAAGACATTGACGGCGAGTGATACCAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTTCCTCCATTGGATTTCTCACAGCAGCCTCCTGCACAAGAACTAATTGCTAGGGATCTCCATGACACTGAGTGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGGCACCTTCTTACCACTGGGTGGAGTGTATTTGTTAGTGCCAAAAGACTTGTAGCTGGAGATTCTGTGCTTTTCATTTGGAATGAAAAAAATCAGCTTCTTTTGGGAATACGCCGTGCCAGTCGGCCACAAACTGTTATGCCATCATCAGTTCTTTCCAGTGATAGTATGCACATTGGACTTCTTGCGGCTGCAGCTCATGCTGCAGCAACTAATAGCTGTTTCACCGTGTTCTATAATCCAAGGGCTAGTCCATCCGAGTTCGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTGTTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTGCGCAGGTACATGGGTACAATAACTAGCATAAGTGATATGGATCCTGCTCGGTGGCCGAATTCTCATTGGCGGTCTGTTAAGGTCGGTTGGGATGAATCGACAGCTGGAGAGAGACAGCCACGGGTATCTTTATGGGAGATTGAGCCTTTAACTACATTTCCAATGTATCCATCACTATTTCCCCTTCGATTGAAACGACCGTGGCATCCTGGCACTTCTTCTTTTCTTGATGGCAGAGACGAAGGGCTAATGTGGCTGAGAGGTGGTCCTGGAGACCATGGTCTTAATTCTCTGAATTTTCAAGGTGCGGGATTGTTGCCCTGGATGCAGCAGAGACTGGGTCCAACTTTGCTCGGAAATGATCAAAATCAGCAATATCAAGCCATGTTGGCCGCTGCTGGTTTGCAGAACCAAGGGAATGTCGATCTATTGAGGCAACAAATGATGAATTTTCAACAGCCTTTCAATTATCTTCAACAATCGGGAAACCTCAGTCCTTTGCAGCTTCAGCAGCAGCAAGCAATTCAACAATCCTTATCGACTAATATCCTGCAACCACAAGGCCAAGTGTTGGCACACAACAATCGTGAAAACCAAACGCAGCAAGCGCAACAGCAACAACACAGTTATCAAGATTCGGTTTTGATTCAAGGTGATCCACTCCATCAGAGGCAACACTCTAGTTTGCCGTCACCATCATATTCAAAACCAGATTACTTAGACACAGGCATGAAGTTTTCTGCTTCAGTTTCGCCGAGTCAAAACATGCTCGGTTCACTTTGTTCAGAAGGGAGTGGCAATCTGTTGAATTTATCCAGAAGTGGTCATTCTATGCTGAATGAACAGTTACCTCAACAATCATGGGCCTCAAAGTATTCACCTTCGCAGGTCAATGCCATTGGCAACTCTTCAATGTCGCACATGCAGTATTCCGGAAGAGATACGGCAATGGTACCACCGCATTGCAACTCAGATTCCCAAAATTCCATTCTGTTTGGGGTCAATATCGATTCATCTGGTCTTCTGCTCCCTACGACTGTCCCTCGTTATACTACTGCATCTGCTGACACCGATGCATCCACAATGCCTTTAGGGGAGTCTGGTTTCCAGGGTTCTCCATATCCTTGCATGCAAGATTCATCGGAGTTGTTGCAAAGTGCAGGGCAGATTGATAACCAAAACCAGACGCCGACATTTGTAAAGGTATACAAAGTAGGTTCCGTAGGGCGCTCACTTGACATCTCGCGATTCAACAGCTATCATGAGCTGTGGGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAATTTGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAGTAA 2328 0.4579 MKLSTSGMSQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGQIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDTEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITSISDMDPARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFLDGRDEGLMWLRGGPGDHGLNSLNFQGAGLLPWMQQRLGPTLLGNDQNQQYQAMLAAAGLQNQGNVDLLRQQMMNFQQPFNYLQQSGNLSPLQLQQQQAIQQSLSTNILQPQGQVLAHNNRENQTQQAQQQQHSYQDSVLIQGDPLHQRQHSSLPSPSYSKPDYLDTGMKFSASVSPSQNMLGSLCSEGSGNLLNLSRSGHSMLNEQLPQQSWASKYSPSQVNAIGNSSMSHMQYSGRDTAMVPPHCNSDSQNSILFGVNIDSSGLLLPTTVPRYTTASADTDASTMPLGESGFQGSPYPCMQDSSELLQSAGQIDNQNQTPTFVKVYKVGSVGRSLDISRFNSYHELWEELAQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01482 775 CDD B3_DNA 127 228 IPR003340 GO:0003677
Car02g01482 775 PANTHER AUXIN RESPONSE FACTOR 1 775 - -
Car02g01482 775 Gene3D - 702 775 - -
Car02g01482 775 Gene3D - 292 364 - -
Car02g01482 775 Gene3D - 126 229 IPR015300 -
Car02g01482 775 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Car02g01482 775 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 775 IPR044835 GO:0003677|GO:0006355|GO:0009725
Car02g01482 775 ProSiteProfiles PB1 domain profile. 707 775 IPR000270 GO:0005515
Car02g01482 775 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Car02g01482 775 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Car02g01482 775 SMART B3_2 128 230 IPR003340 GO:0003677
Car02g01482 775 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01482 Car-Chr2 42015577 42023962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01482 98 775 B3 DNA Binding Superfamily AT5G37020 65.670 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car02g01482 B3 4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01482 - - gmx:100784804 1352.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01447 05 58664837 58673941 Car02g01482 02 42015577 42023962 PCT