Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01457 ATGTCTTTACAGAAGCTCAAGAAGCTGAAGCTGGAAACACCAAGTTCCAATTTTGAAGCTGACCCATCAAGCAAATCAAACAAAAAAATCAAAAGGAAGCTTGTTCGAATCATAATAACCGACCACGACGCCACTGATTCTGAATCCTCCGGAGATgaagagagagaaagaaacaaccaagcaagaaaacagagaaaagcaaagagagaaaTTCTTCATATTAACATGCACCCTTCCGTACCAGATTCCTCTACAATttctccttctccttcatcttcatgttcttctctttcccgttccttgtcTGAGAAAAACCAAAAAAAGTACAGTAGAACCAAAAAACCACCACCCGCCGCCGCCACGCGCCACCACAACAAGTTCAGAGGCGTAAGGCAGCGGCCGTGGGGACGGTGGGCGGCGGAGATTCGTGACCCAAATCGCCGAAAACGGTTATGGCTCGGAACTTTTAACACGGCGGAGGAAGCTGCCGCCGAATACGACAGGGCGGCGGTGATGCTGAAGGGTACTAACGCCGTTACCAACTTTCCCGTGATGCCGGCGGAGGTGATGGTTGAAGCACCGCCGCCGGTAGAAGACGGTGGAAATGAAGGCGGAGCTGTTTACTCCGCCGCTTTGGCGTCGCCGACGTCTGTTTTAACTTACGACTGTGACTCAACGCCGTTTGACGGTTTTCGGTACGGCGACGTGGATGCCTTTGGGTTCCACATCGACGCGCCGTTAAGTTTGCCGGAAGTGAACGTTACGCTGACGTGTAATCAGCGGTTAGAAAAGGAAGAGGCGTTTGAAGAGTTTTTTGATCTTGATGAGTTTATGACGTGGCCGTACTAA 849 0.4488 MSLQKLKKLKLETPSSNFEADPSSKSNKKIKRKLVRIIITDHDATDSESSGDEERERNNQARKQRKAKREILHINMHPSVPDSSTISPSPSSSCSSLSRSLSEKNQKKYSRTKKPPPAAATRHHNKFRGVRQRPWGRWAAEIRDPNRRKRLWLGTFNTAEEAAAEYDRAAVMLKGTNAVTNFPVMPAEVMVEAPPPVEDGGNEGGAVYSAALASPTSVLTYDCDSTPFDGFRYGDVDAFGFHIDAPLSLPEVNVTLTCNQRLEKEEAFEEFFDLDEFMTWPY 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01457 282 CDD AP2 126 184 IPR001471 GO:0003700|GO:0006355
Car02g01457 282 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 225 - -
Car02g01457 282 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 23 225 - -
Car02g01457 282 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Car02g01457 282 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Car02g01457 282 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Car02g01457 282 SUPERFAMILY DNA-binding domain 126 184 IPR016177 GO:0003677
Car02g01457 282 MobiDBLite consensus disorder prediction 78 103 - -
Car02g01457 282 MobiDBLite consensus disorder prediction 24 75 - -
Car02g01457 282 PIRSF PTI6 1 282 IPR017392 GO:0003700
Car02g01457 282 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
Car02g01457 282 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
Car02g01457 282 Gene3D AP2/ERF domain 125 185 IPR036955 GO:0003700|GO:0006355
Car02g01457 282 MobiDBLite consensus disorder prediction 1 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01457 Car-Chr2 41692121 41693930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01457 33 221 AP2-EREBP Transcription Factor Family AT4G27950 42.079 9.34e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car02g01457 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01457 K13434 - gmx:100800489 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01457 02 41692121 41693930 Car02g01457 02 41692121 41693930 ECH
Car05g01408 05 58199845 58201469 Car02g01457 02 41692121 41693930 PCT