Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01444 ATGGGTGGAAGAAAAGTGAAGCTTGCATTCATAGCCAAGGACACAGCAAGGAAAGCAGCCTACAAGAAGAGGATAAAAGGTTTCATGAAGAAGCTCAATGAACTCACAACCCTATGTGGAGTTAGGGCTTGTGCTATCGTGTTCAAGCCCGATGAACGCGAACCACAAATTTGGCCATCCTTTCAAGGAGTCCAAAATGTGTTGATTCGATTCATGCATATTCCTGACTTCGAACGGGACCGAAAGATGATGAATCAAGAGACTTACCTCAAGGAAAGGGTCCTAAAGGTCAAAGAGAAGTTGAAGAAGAAAACGAAAGATAATAGGAAGACCGAGATGACCGTTCATATGTATAACATTCTTGAGACCGGAATTTTTCCAGAGAATTTCAACACTGTTGATCAAAATGATCTAACGTATGTAATTGACGAGAAAATAAAGGAAATTCAAATGAAGATGGTGGAATTAGACAATGTTCAAGCGGCCGTTCAGAGGCTTTGA 501 0.4092 MGGRKVKLAFIAKDTARKAAYKKRIKGFMKKLNELTTLCGVRACAIVFKPDEREPQIWPSFQGVQNVLIRFMHIPDFERDRKMMNQETYLKERVLKVKEKLKKKTKDNRKTEMTVHMYNILETGIFPENFNTVDQNDLTYVIDEKIKEIQMKMVELDNVQAAVQRL 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01444 166 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Car02g01444 166 Gene3D - 14 119 IPR036879 GO:0003677|GO:0046983
Car02g01444 166 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 158 - -
Car02g01444 166 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car02g01444 166 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Car02g01444 166 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Car02g01444 166 PANTHER MADS BOX PROTEIN 3 158 - -
Car02g01444 166 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01444 Car-Chr2 41344432 41344932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01444 1 158 Type I MADS-box Gene Family AT5G48670 43.671 3.77e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car02g01444 SRF-TF 5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01444 - - cam:101507243 305.449