Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01442 ATGGCATCTTCTTCTACTTTGTTAGTTGTTATGTTCTTTCTCTTTATTGAAAACCACTTTCATGGTGTCACTGCTAACTATGGCGGTTGGCAGAGTGGTCATGCCACTTTCTATGGTGGTGGTAATGCTGCTGCCACAATGGGAGGTGCATGTGGTTATGGAAATTTATACAATCAAGGATATGGAACTAACACAGCAGCTCTAAGCACAGCTTTGTTCAATAATGGTTTGAGCTGTGGATCATGTTATGAAATGAGGTGTCTTGGTGACTCAAAATGGTGCAAACCTAACACCATTGTTGTTACTGCCACAAACTTTTGTCCACCAAACAGTAATGGTGGTTGGTGTAATCCTCCTCTTCAACACTTTGATATGGCAGAACCAGCTTTCCTTCAAATTGCTCAATATAAAGCTGGAATTGTGCCTGTTTCATTTAGAAGAGTGTCATGTATAAAAAAGGGAGGAATAAGGTTCACAATCAATGGCCATTCTTACTTCAACTTGGTTTTGATCACCAACGTCGCGGGTGCAGGTGATGCCTATGCAGTGTCAATCAAAGGGTCCAAAACTAGCTGGCAATCCATGTCAAGAAATTGGGGCCAAAATTGGCAAAGCAATTCCTACCTCAATGGACAAAGCCTCTCTTTTAAAGTCACCACTAGTGATGGTAGAATTGTGACAAGCTACAACGTGGCACCAGCTAATTGGCAATTTGGTCAAACCTTCCAAGGGGGTCAATTTTAG 744 0.418 MASSSTLLVVMFFLFIENHFHGVTANYGGWQSGHATFYGGGNAAATMGGACGYGNLYNQGYGTNTAALSTALFNNGLSCGSCYEMRCLGDSKWCKPNTIVVTATNFCPPNSNGGWCNPPLQHFDMAEPAFLQIAQYKAGIVPVSFRRVSCIKKGGIRFTINGHSYFNLVLITNVAGAGDAYAVSIKGSKTSWQSMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRIVTSYNVAPANWQFGQTFQGGQF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01442 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 155 IPR007112 -
Car02g01442 247 SMART dpbb_1 65 145 IPR007112 -
Car02g01442 247 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Car02g01442 247 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Car02g01442 247 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Car02g01442 247 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Car02g01442 247 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Car02g01442 247 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Car02g01442 247 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Car02g01442 247 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Car02g01442 247 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
Car02g01442 247 SUPERFAMILY Barwin-like endoglucanases 11 173 IPR036908 -
Car02g01442 247 PANTHER EXPANSIN-A15 9 247 IPR002963 GO:0009664
Car02g01442 247 PANTHER EXPANSIN 9 247 - -
Car02g01442 247 SUPERFAMILY PHL pollen allergen 152 244 IPR036749 -
Car02g01442 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
Car02g01442 247 Gene3D - 16 150 IPR036908 -
Car02g01442 247 Pfam Lytic transglycolase 65 145 IPR009009 -
Car02g01442 247 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Car02g01442 247 Gene3D - 155 247 IPR036749 -
Car02g01442 247 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Car02g01442 247 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Car02g01442 247 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Car02g01442 247 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Car02g01442 247 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Car02g01442 247 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01442 Car-Chr2 41333594 41335702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01442 6 247 Expansin Gene Family AT2G40610 75.000 1.17e-137 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01442 - K20628 gmx:100816848 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01442 02 41333594 41335702 Car02g01442 02 41333594 41335702 ECH
Car05g01375 05 57718523 57721144 Car02g01442 02 41333594 41335702 ECH
Car05g01375 05 57718523 57721144 Car02g01442 02 41333594 41335702 PCT