Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01413 ATGCTTTCAGGGGACATACCTCCAAATCAAACCATTTACGTTAAGAATCTCAATGAGAAGGTTAAGAAAGAAGAGTTGAAGAGATCTCTGTACTGCTTATTCTCTCAATATGGCAGGATTTTGGATATTGTAGCTCTAAAGACACCCAAGCTTCGAGGACAGGCTTGGGTTTGTTTTAGTGAAGTAACGTCTGCCAGTAATGCAGTGCGACAGATGCAAAACTTCCCATTTTATGAAAAACCTATGCGAATTCAATATGCAAAATCAAAGTCAGATTGTATTGCTAAAGAAGAGGGAAGTTATGTTCCAAGGGAGAAGAAAAAGAAAATAGAGGAGAAAGCTGAGAAAAAGAGGCATGAAACGCCACAATCTTCCGTGCCTAATGGAACACATGGTGCAAGTAATGGCGGCCCAACAGCCTCATTCCGTCCGGGGTCTGGTGCCCAAGAAGCAGTTGCTCCTAACAATATTTTGTTCATAGAGAATTTGCCTTACGAAACTACCGGTAGGATGCTTGAAATGCTCTTTGAACAATACCCGGGTTTTAAGGAAGTGCGCTTGATTGAAGCAAAGCCAGGTATCGCCTTCGTAGATTTTGAAGATGATGTGCAATCATCAATGGCAATGCAGGCTCTTCAAGGCTTCAAAATTACCCCTCAAAATCCTATGATTATAAACTTTGCTAAGAAGTAA 693 0.4113 MLSGDIPPNQTIYVKNLNEKVKKEELKRSLYCLFSQYGRILDIVALKTPKLRGQAWVCFSEVTSASNAVRQMQNFPFYEKPMRIQYAKSKSDCIAKEEGSYVPREKKKKIEEKAEKKRHETPQSSVPNGTHGASNGGPTASFRPGSGAQEAVAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDDVQSSMAMQALQGFKITPQNPMIINFAKK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01413 230 MobiDBLite consensus disorder prediction 104 147 - -
Car02g01413 230 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 230 IPR000504 GO:0003723
Car02g01413 230 CDD RRM1_U1A_like 11 88 - -
Car02g01413 230 Gene3D - 146 230 IPR012677 -
Car02g01413 230 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 4 230 - -
Car02g01413 230 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Car02g01413 230 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 217 IPR000504 GO:0003723
Car02g01413 230 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Car02g01413 230 MobiDBLite consensus disorder prediction 123 142 - -
Car02g01413 230 SUPERFAMILY RNA-binding domain, RBD 8 219 IPR035979 GO:0003676
Car02g01413 230 Gene3D - 4 113 IPR012677 -
Car02g01413 230 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 4 230 - -
Car02g01413 230 MobiDBLite consensus disorder prediction 104 122 - -
Car02g01413 230 SMART rrm1_1 11 85 IPR000504 GO:0003723
Car02g01413 230 SMART rrm1_1 157 226 IPR000504 GO:0003723
Car02g01413 230 CDD RRM2_U1A_like 154 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01413 Car-Chr2 40850737 40854949 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01413 3 230 Eukaryotic Initiation Factors Gene Family AT1G71770 22.650 1.10e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01413 K11094 - gmx:100805822 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01413 02 40850737 40854949 Car02g01413 02 40850737 40854949 ECH