Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01412 ATGGCTTCATCCTCTAGTAGTTTAGAAAACAACAACAACTCTTTAAACTCTTTCAACAATTTCACTTTCTCAACACACCCTTTCATGACAACATCTTTTTCTGACCTTTTAGCTTCTCCTATTGATGATAACAAATTAAGGGGTGAAAGTGGTTTTGGTGATCGTGGTGTGCCTAAATTCAAGTCTACACCCCCTCCTTCTTTGCCTTTAACACCTCCCTCTGTTTCTCCTTCTAATTATTTTTCTATTCCTCCTGGTTTGAGTCCTGCTCAGTTACTTGATTCACCTGTTTTGTTAAACTCTTCCAATATTTTGCCATCTCCTACTACTGGTGCTTTTTCTGCTCAAAGCTACAATTGGAGAAACAATTCTGAGGGGAATCAACAAATTGTCAATGAAGAAAACAAAAGCTTCTCAAATTTCTCTTTTCAAACTCAACAAGGACCTCCTGGTAATGCATCCACAACAAATTTTGAATCATCAACAATTAGAGTTCAACAGGAACAACCATGGAGTTATCAAGAAGGAAACAAACAAGATGGATTTTCATCTGGAAACAATATGATTCAAACTGAAAACAACAACTCTTCAATGCAGAGTTTTTCCCCTGAAATTTCCAATGTTCAAACCAACAACAACAATGGATTTCAATCAGATTACACCAACAATAACCAATCACAACAACCTCAAACATTAAGCAAAAAATCAGATGATGGTTACAATTGGAGAAAATATGGACAAAAGCAAGTAAAAGGAAGTGAAAATCCTAGAAGTTATTACAAATGCACATACCCTAATTGTCCTACAAAGAAGAAAGTTGAGAGATCAATTGAAGGACAAATTACTGAGATTGTTTATAAGGGTACTCATAATCATCCTAAGCCACAATCTACAAGAAGAAACTCTTCAAATTCTCTTGTGATTGTTCCTGTTAATCCTATCATCAGCAATGAAATTCATGATCAATCATATGCTATGCATGGTAATGGACAATTGGATTCTGGTACTACACCAGAGAATTCATCAATTTCAATAGGGGATGATGATTTTGAACAGAGTTCTCAGAAGTGTAAATCAGGTGGTGGTGGTGATGAATATGATAATGAAGATGAACCTGATGCCAAAAGATGGAGAGTTGAAGGTGAAAATGAGGAGGGAATTTCAGCTTCTGGAAGTAGAACTGTAAGAGAACCTAGAGTTGTTGTTCAAACAACAAGTGACATTGATATCCTAGATGATGGATATAGATGGAGGAAATATGGACAGAAAGTAGTTAAGGGCAATCCAAATCCAAGGAGTTACTACAAATGTACACACCCTGGTTGTCCAGTGAGGAAACATGTTGAGAGAGCCTCACATGATTTAAGGGCTGTGATCACAACTTATGAGGGGAAACATAACCATGATGTCCCGGCTGCTCGCGGCAGTGGCAGTCAGGCTGTCAACCGGCCGATGCCGAATAACCATTCAAATTCCAACATTGCAGCTGCTGCCGCCATAAGGCCTCTTCAGACTATTCAAAGTCAAAGGCCATCAGCACAATCGCCTTTTAACCCTGAGATGATTCAGGGTCAAGGAAATTATGGATATTCGGGGTTTGAAAATTCGATGGATTCGTACATGAATCATCGTcaacaacaacaacaacaaATATCTGAGAATGGTTTTTCCTCTAGAGCCAAGGATGAACCTAAAGATGACATGTTCCTTGAATCTTTGCTATGCTGA 1728 0.3785 MASSSSSLENNNNSLNSFNNFTFSTHPFMTTSFSDLLASPIDDNKLRGESGFGDRGVPKFKSTPPPSLPLTPPSVSPSNYFSIPPGLSPAQLLDSPVLLNSSNILPSPTTGAFSAQSYNWRNNSEGNQQIVNEENKSFSNFSFQTQQGPPGNASTTNFESSTIRVQQEQPWSYQEGNKQDGFSSGNNMIQTENNNSSMQSFSPEISNVQTNNNNGFQSDYTNNNQSQQPQTLSKKSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSIEGQITEIVYKGTHNHPKPQSTRRNSSNSLVIVPVNPIISNEIHDQSYAMHGNGQLDSGTTPENSSISIGDDDFEQSSQKCKSGGGGDEYDNEDEPDAKRWRVEGENEEGISASGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSQAVNRPMPNNHSNSNIAAAAAIRPLQTIQSQRPSAQSPFNPEMIQGQGNYGYSGFENSMDSYMNHRQQQQQQISENGFSSRAKDEPKDDMFLESLLC 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01412 575 MobiDBLite consensus disorder prediction 286 305 - -
Car02g01412 575 MobiDBLite consensus disorder prediction 141 241 - -
Car02g01412 575 MobiDBLite consensus disorder prediction 507 575 - -
Car02g01412 575 SMART WRKY_cls 236 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g01412 575 SMART WRKY_cls 411 470 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g01412 575 MobiDBLite consensus disorder prediction 291 305 - -
Car02g01412 575 MobiDBLite consensus disorder prediction 47 73 - -
Car02g01412 575 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 44 545 - -
Car02g01412 575 MobiDBLite consensus disorder prediction 325 375 - -
Car02g01412 575 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 44 545 IPR044810 GO:0003700
Car02g01412 575 ProSiteProfiles WRKY domain profile. 406 471 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g01412 575 SUPERFAMILY WRKY DNA-binding domain 403 471 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car02g01412 575 MobiDBLite consensus disorder prediction 507 557 - -
Car02g01412 575 Pfam WRKY DNA -binding domain 412 468 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g01412 575 Pfam WRKY DNA -binding domain 237 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g01412 575 Gene3D WRKY domain 398 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car02g01412 575 SUPERFAMILY WRKY DNA-binding domain 235 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car02g01412 575 ProSiteProfiles WRKY domain profile. 237 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g01412 575 Gene3D WRKY domain 221 296 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car02g01412 575 MobiDBLite consensus disorder prediction 141 236 - -
Car02g01412 575 MobiDBLite consensus disorder prediction 325 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01412 Car-Chr2 40831254 40835113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01412 234 574 WRKY Transcription Factor Family AT2G38470 56.338 7.20e-108 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car02g01412 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01412 K13424 - gmx:100127385 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01412 02 40831254 40835113 Car02g01412 02 40831254 40835113 ECH
Car05g01343 05 57342714 57346255 Car02g01412 02 40831254 40835113 PCT