Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01408 ATGCCCATCAGAATTTCCAATAGAGTAATAATAATACAAAAAAAACAATGGAGAATATTAGGATTTTTTTCAAGTATCATTGGACTAATTTCTTATGCACTTAGCTCTTCTTTTATTCATCTTTTTGGAGAGTGGAACTTCATCAAAATCATTATTTACGCTATGATAAATTTGATGCTATCTATTGTTGCTGCAATCTTCTGTTATTCTCTTATGGTTCTTCGTTCGAAATTTGAGTCTCGCCCCGCGATTGGTAATTTAAGAATGGAAGATGATGTAGCCATAGAAATATTTGATGCTGAAGACAACAACAATAGAAATGAACTGAAAAATTATAGTAATGGTAACCAAAAAAATGAGTCTTTAAGAAGAAGGGTGCATGATGATGATGGATATAATTGGAAAAAATATGAAGAGAAATTAGAAAAAGGAAGTGAAAATCAGAGAAGTTATTACAAATGTAATTGGCCTAATTGTGCTGTGAAGAAAAAAGTTGAGAGAAATATAGATGGTGAAATTATTGAGACACAATATAAAGGTACACATAATCATTATAAGCCTAAGTCTGCAATGAAGAGGAATTCATCATCTGAATTTGTTTATTCACTTTTACAATCAAAGACTTTCCACACTGACTTGCCAGATCAATTACTTGCTTCTCAAGGCAATGAACAATTGGATTCTGATGCAGAACCTGAAAGCTCCTCAGTATCAATATGA 720 0.3167 MPIRISNRVIIIQKKQWRILGFFSSIIGLISYALSSSFIHLFGEWNFIKIIIYAMINLMLSIVAAIFCYSLMVLRSKFESRPAIGNLRMEDDVAIEIFDAEDNNNRNELKNYSNGNQKNESLRRRVHDDDGYNWKKYEEKLEKGSENQRSYYKCNWPNCAVKKKVERNIDGEIIETQYKGTHNHYKPKSAMKRNSSSEFVYSLLQSKTFHTDLPDQLLASQGNEQLDSDAEPESSSVSI 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01408 239 ProSiteProfiles WRKY domain profile. 129 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g01408 239 MobiDBLite consensus disorder prediction 217 239 - -
Car02g01408 239 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 4 192 - -
Car02g01408 239 SMART WRKY_cls 128 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g01408 239 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 4 192 IPR044810 GO:0003700
Car02g01408 239 SUPERFAMILY WRKY DNA-binding domain 125 187 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car02g01408 239 Pfam WRKY DNA -binding domain 129 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g01408 239 Gene3D WRKY domain 114 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01408 Car-Chr2 40773389 40774648 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01408 97 188 WRKY Transcription Factor Family AT2G38470 45.918 1.39e-23 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car02g01408 WRKY 1.6e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01408 K13424 - mtr:MTR_5g093540 203.756