Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01348 ATGGAGGTTGATGATGGTGGTGGTGATAAGGGTAATGGAAATAGAAAACGTAAAAGAGGATCGCCCAAAAGAAAGCTTCTTGTTAATGAAAAAGTCGAGCTGAGGAGTTTGGAGGAAGGTTTTCTGGGATCATGGCATCCAGGGAAAGTAATTCGGTGCGGAAAGATGAAGCGTTATGTCAAATATGACAATATTCTTGATGATGACGAATCAGATTATCTTGTGGAAGTGGTGAATGTTTCAAGTGTTTTGGATGGTGCTAATTCTTCTTCTGTTTCAAATTGTGGCTATGAACGCGGCCTCATTAGACCGTTACCTCCTCCTATCAAGTTTCGGATAAAGGAACTTTCATTCGGACTCTGTGTTGATGTGAATTATCAGGAAGCTTGGTGGGAAGGGGTGATATTCGACCGAAACGACGGATTCGAGGAGAGGAGCATTTTCTTCCCTGATTTAGGTGATGAAATGAAGGTTGGAGTTCAACAATTGAGGATCACTCAGGATTGGGATGAAGAAACTGAGAATTGGTTGCCAAGAGGGAAATGGGTGTTTCTTGAGTTGTTTGAGGAGTGTGAGAGAGTATCCTATGTTGCGGTTTCGGTGAAACAGATTTGGTATGATGTTAGGATAAGAAAGGATTTTGCTGAAACCATTAGAGAATGGACTTGTAATGTGAAGGATTTGTGGAGAGAGCTTGTTGTGGAAGTAATTGGTGAATACTATACTCTCACACTAAGTGAAGTTCGCTCCGCCTTAAATGTTCCGAAGAATTTACTGGAAGGAGGGTCATTTGAACACACTGATAATGTTCTTTGTGATGATAGGCCTAAGGAAAACGGCGATTCCTCAAAATTGTTGGATACTGATCAAAACTGTGGTAGCACTAGTATCATTCCTGTTCAAGAGGAATTTGAGAAGGAAAATCTTTTGGATGAAGAGCCTGAATCACAGAAAGAAATTTCCTGCAATGATGATGAATTGGTTTCGAATAAGAATAAAAAACGGAGACGCTCCAAGTCCGTAGTTTGGAAAACTCTGGTAATGTCTGAAGTTGAATTCTGTCCTGAAGTTATAAATGAATATGCAGCTGGATGTAGGAGCAAGACGGTTCGGGAGCTTTTGAAGACGAAAGTAAGAAAACATCTTGCATATCTTGGATGGACAATTGAGTGGACTGAAAACAATTATCCTCAACATAAACGATACCGGTACATGTCTCCTGATAAACTCGATCAGAAGGCTTACGCTTCGATTTTTCAAGTTACTAAAGTTTTGCTAAAGGAGCCTGTGCCGTCTCAAATTGATCGCAATAGGATGCATTCGCAATTTGACAGCAATATTTTAAATCTGCTTTCTGATCCACCTCAAATGAAAAAGGATTTAGATGTTAACCCTCCAACCAAGAAACCTTCTCCAGTGATAGTTGAAGTTGAACCTGAATTATGTCCTATAGCCGTCGTTAAATATTACTTTCATGCACTAGAGAGAAACTCGGCTGAAAAAAGGACATGGAAATTGAAGGCGAAAAAACATCTATTAGCAGAAGGATGGATCTTTGACTACCCAACTGAAAGAAGGAAGACAACTTTGTACAAGTCTCCACAAAATCAGTGTTTAGGCACACTTCGAGGTGCGTGCAGACTATACCTTAAAGCAAAGATTCCTGAATGGACTAatgctgatgatggtgatgatgatCTATTGGTGAGTGTGTTTCAATTGCTTCAAAAAGAGCCTGAATTGCATACTATAGACAATTCTCCGCCAAGTAAATCATCTGTGAAGAGAACATACAGACGCACCACGAATTCAAAGGCTAGCCAACCAAAGAGCATAGAGGAGAATGAAGTAGATACCGGCCGGGTGCTAAGGTCAAGCAAAAGGGTGCAGAAGGTGTTGGGTTTGACGCATCAAAAGCCTCAAAATGTTATATCTTGGTTAATAGATTGCAACATTCTGTTGCCAAAATACAAGGTCTTTTACTGGGAAACCGAAAAAGGGAACGCTCCCATGGTCGAGGGAAGGATAACTCAAGAAGGAATCAGGTGCAGTTGTTGTCAGAAGGTTTATGGCCTTAGAGGCTTTGCAAATCATGCTGGTGGAAGTAGTAGCTTCAGGCCTTCTGCCTGTATCTTTTTGAAGGATGGTAGATCACTGTTAGATTGCATGATGCAAGTAATGCAATATCATAGGAGAAAGGAAGTTGCGGAGAAACCGTGCAGTGATCCGTTCGAAGGCGAAAATGACAACATTTGTTCTGTTTGTAACTATGGTGGCGAACTCATTTTATGCGACCAATGCCCCTCGTCGTTTCATAAGAAGTGTCTTAATTTGGAGGATATCCCTGATGGTGATTGGTTTTGTCCATCATGCCAATGCGGGATTTGCGGCCAAAACAAAATTGAAGAGGCTAAGGATGGACATTTTCTTTCTTGCATTCAGTGTGAACATAAATATCATGTTGAGTGCCTCAAAAATAGAGCAAAAGAAAATTCAAGAAGATATATGGAAAAAAATTGGCTATGTGGAGAAGAGTGTGAACGGATCTACACGGGCCTCCAAAATCTATTGGGAAAGCCGGTTTTAGTTGGTGCAGACAATCTAACTTGGACATTGGTGAAGTATGTCAACTCTGAGAATTGTGGTGCTGGCAGTGCTGAAAATGACTTACCGGAAGAGAGTTTTAGCAAACTCCACGTTGCACTTTCAGTGATGCATGAATGTTTTGAGCCCTTACATAACCCTTTCTCTAGCAGAGATATCGTCGAAGATGTTTTATTCAACCAAAGGTCCGAGCTCAATCGACTAAACTTCCGGGGTTTCTATACCGTACTTCTAGAGAAAAATGAACAATTGGTTAGTGTGGCAACTGTTAGGATATTTGGAGAGAAGATAGCTGAAGTCCCCCTTATAGGTACCAGATTTCAGTATCGACGACTTGGAATGTGCCGCGTTTTAATGGATGAGCTTGAAAAGAAGCTAAAGCAACTGGGGGTGGAGAGGCTAGTCTTACCTGCTGTTCCTGGTGTACTAGAAACATGGACCAATTCCTTTGGCTTTGTGCAGATGAAAAATTTTGAGAGATCAAAGTTTTTGGACTACTCTTTCCTAGATTTTCAAGGAACTGTCATGTGTCAGAAAATGTTGACAAGACTTCCATCACCGGATTCAGTTATAACTAGAGACATAAATACAAAGCAACAGGATGCTGGTTTCTCCGTCAAATGTCGAATTGATTTTGAGAAGTCGAGTCCCATATCAGAAGTGGACCAAGAAGAAGGGATTGGCAAAAGTGGAATAATGGATCTACAAGTTTGGAAACCAAGGCCTAATTCCTAA 3339 0.4064 MEVDDGGGDKGNGNRKRKRGSPKRKLLVNEKVELRSLEEGFLGSWHPGKVIRCGKMKRYVKYDNILDDDESDYLVEVVNVSSVLDGANSSSVSNCGYERGLIRPLPPPIKFRIKELSFGLCVDVNYQEAWWEGVIFDRNDGFEERSIFFPDLGDEMKVGVQQLRITQDWDEETENWLPRGKWVFLELFEECERVSYVAVSVKQIWYDVRIRKDFAETIREWTCNVKDLWRELVVEVIGEYYTLTLSEVRSALNVPKNLLEGGSFEHTDNVLCDDRPKENGDSSKLLDTDQNCGSTSIIPVQEEFEKENLLDEEPESQKEISCNDDELVSNKNKKRRRSKSVVWKTLVMSEVEFCPEVINEYAAGCRSKTVRELLKTKVRKHLAYLGWTIEWTENNYPQHKRYRYMSPDKLDQKAYASIFQVTKVLLKEPVPSQIDRNRMHSQFDSNILNLLSDPPQMKKDLDVNPPTKKPSPVIVEVEPELCPIAVVKYYFHALERNSAEKRTWKLKAKKHLLAEGWIFDYPTERRKTTLYKSPQNQCLGTLRGACRLYLKAKIPEWTNADDGDDDLLVSVFQLLQKEPELHTIDNSPPSKSSVKRTYRRTTNSKASQPKSIEENEVDTGRVLRSSKRVQKVLGLTHQKPQNVISWLIDCNILLPKYKVFYWETEKGNAPMVEGRITQEGIRCSCCQKVYGLRGFANHAGGSSSFRPSACIFLKDGRSLLDCMMQVMQYHRRKEVAEKPCSDPFEGENDNICSVCNYGGELILCDQCPSSFHKKCLNLEDIPDGDWFCPSCQCGICGQNKIEEAKDGHFLSCIQCEHKYHVECLKNRAKENSRRYMEKNWLCGEECERIYTGLQNLLGKPVLVGADNLTWTLVKYVNSENCGAGSAENDLPEESFSKLHVALSVMHECFEPLHNPFSSRDIVEDVLFNQRSELNRLNFRGFYTVLLEKNEQLVSVATVRIFGEKIAEVPLIGTRFQYRRLGMCRVLMDELEKKLKQLGVERLVLPAVPGVLETWTNSFGFVQMKNFERSKFLDYSFLDFQGTVMCQKMLTRLPSPDSVITRDINTKQQDAGFSVKCRIDFEKSSPISEVDQEEGIGKSGIMDLQVWKPRPNS 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01348 1112 Gene3D - 894 1031 - -
Car02g01348 1112 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 888 1038 IPR000182 GO:0016407
Car02g01348 1112 SMART PHD_3 793 846 IPR001965 -
Car02g01348 1112 SMART PHD_3 751 792 IPR001965 -
Car02g01348 1112 MobiDBLite consensus disorder prediction 1 15 - -
Car02g01348 1112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 794 849 IPR013083 -
Car02g01348 1112 PANTHER PHD ZINC FINGER PROTEIN 9 1107 - -
Car02g01348 1112 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 9 1107 - -
Car02g01348 1112 MobiDBLite consensus disorder prediction 582 619 - -
Car02g01348 1112 Pfam Tify domain binding domain 674 725 IPR032308 -
Car02g01348 1112 SMART agenet_At_2 24 92 IPR014002 -
Car02g01348 1112 SMART agenet_At_2 114 171 IPR014002 -
Car02g01348 1112 Pfam Agenet domain 30 107 IPR008395 -
Car02g01348 1112 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 907 1029 IPR016181 -
Car02g01348 1112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 744 793 IPR013083 -
Car02g01348 1112 ProSiteProfiles Zinc finger PHD-type profile. 749 794 IPR019787 -
Car02g01348 1112 MobiDBLite consensus disorder prediction 583 610 - -
Car02g01348 1112 CDD PHD2_CHD_II 752 791 - -
Car02g01348 1112 SUPERFAMILY FYVE/PHD zinc finger 733 792 IPR011011 -
Car02g01348 1112 Pfam PHD-finger 751 793 IPR019787 -
Car02g01348 1112 MobiDBLite consensus disorder prediction 1 22 - -
Car02g01348 1112 CDD NAT_SF 944 1004 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01348 Car-Chr2 39621795 39628164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01348 26 997 PHD Transcription Factor Family AT5G58610 36.810 0.0 571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car02g01348 Agenet 6.4e-17 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01348 - - gmx:102661511 1333.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01348 02 39621795 39628164 Car02g01348 02 39621795 39628164 ECH
Car05g01284 05 56497817 56503746 Car02g01348 02 39621795 39628164 PCT