Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01341 ATGGGGTATGAGATTGTGAATAATGAAGGGTTAGGGCAGCATCATGAGGTTTCTTCTTTGCTTGAATTTTCAGCTGCGGATGATTTGATTAGTTTCAGAGATGCAGTTGAAAAGGAGGGCTGTGATGTTGATGGGGTCGGTTTGTGGTACGGAAGGAGGGTTGGTTCGAATAAATTGGGTTATGAAGAGAGGACACCTCTCATGGTTGCTGCTATCTTTGGAAGCTTGGGTGTATCGGCTTATATTCTTGCAACAGGTTACGTTGATGTTAATCGGTCTAGTGGGTCAGATGGTGCTACAGCTCTTCATTGtgctgttgctggtggttctgctgcttctgttgAGATTATCAAGCTTTTGCTTGATGCATCAGCGGATGCGAGTGCGGTTGATGTTAACGGTAACCGACCCGTTGATTTGATTGTCTCTGTGGCAAATTCTATCTTCAATCCAAGGAAGAGGATGCTACAAGCTCTTTTGGAGGGGATCGGTGGTGCTGATTGGACATGTCTTACGTTTCCGGAGGAAATTTCATTTGGCCATGTTGATGAACAGCAACGGCAAGATGTAAACATGCCTCGTGTTTCGAAAGATTATCCTGTTGATCTATCTCTTCCGGACATAAATAATGGGATATTTAGTACTGACGAATTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCACGATTGGACCGAGTGTCCCTTTGTTCATCCAGGGGAAAATGCAAGGCGACGCGATCCAAAGATGTATAATTATACCTGTGTTCCTTGTCCTGAGTTTCGGAAAGGATCGTGTAGCAAAGGGGATTTGTGTGAGTATGCTCATGGTATTTTCGAGTGCTGGCTTCATCCTGCGCAGTATCGAACACGTCTTTGCAAGGACGAGAGTTCGTGCACAAGGAGAGTTTGCTTCTTTGCTCACAAGCTTGAGGAGCTTCGCCCTTTGTATGCTTCAACAGGTTCTGCTATTCCATCTCCTAGGTCATATTCCGGTAGTGCTTCTGCATTGGAGATGGGTTCGCTTAGCCCGATTGCACTCGGCTCTCCATCTGTCATGATACCACCATCTTCGACAACGCCTTTGACTCCATCTGGAGCATCTTCTGCTGTTGCTGCTGCATCCATGTGGCAGACACAGTCCAATGTTTCAGTCCCTACACTTCAGCTTCCAAAAAGCAGGTTTAACACTGCAATAACTGCTGGAGATTTTGATTCAAGTATGGCAATGCTTCAGGTTGAAACTCAGCGACGCAGGCAGCAGCAGCTAAAGATGGACGAGATATCTGGTCTTTCCTCTCCTTCCAACTGGAAAAATTCCATGCCTAACAGTCCTTCTTTTCAAGTTTCTTTGAGTGATCATACCGAAGACATTTTCGGGTCTCATGATCCATCGATATTGCATAATAAATTCCATGGTATCTCACTTGATGCTGCAGGACTACCTCAGTTACAATCTCCAACAGGAATCCAGATGCACCCGAGTATGAATCAGCAGCAGCAAAACTATTCTTCATGCCATTCGCCAACCTATAGGTTTGATCGATCCGGTGAGGCAGCCGCAGCGGCTTTGAATGCAAGAGCTGCTGCCTTTTCAAAGCGAAGCCAGAGCTTTATCGAGCGCAGTGTGGCGAACCGTTATTCCGAGCTTCTTTCTCCGCCCAATCCTTACGCATTTTCCAACTGGGGATCACCAGATGGAAAATTGAATTGGGCCATACATGGCGAAGAACTGAATAAGCTGAGGAAATCATCTTCTTTTGGATTTCGAAGCAGCAGTACTCCTTTAACTACGGCTGCCACTCAAGCACCGGAGAATGACGATGAACCAGATGTATCTTGGGTTAATTCGCTTGTGAAGGACGTTACGCCGCAGGAATCTGGTCAGTATAAGGCTGAATATCAGCAAAGGAAACTGCAATACAATCTTAACAATGGAACCAATGCGATTCCGGCTTGGTTGGAGCAAATGTATATGGAGCAGGAGCAAATGGTGCATTGA 2016 0.4484 MGYEIVNNEGLGQHHEVSSLLEFSAADDLISFRDAVEKEGCDVDGVGLWYGRRVGSNKLGYEERTPLMVAAIFGSLGVSAYILATGYVDVNRSSGSDGATALHCAVAGGSAASVEIIKLLLDASADASAVDVNGNRPVDLIVSVANSIFNPRKRMLQALLEGIGGADWTCLTFPEEISFGHVDEQQRQDVNMPRVSKDYPVDLSLPDINNGIFSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPKMYNYTCVPCPEFRKGSCSKGDLCEYAHGIFECWLHPAQYRTRLCKDESSCTRRVCFFAHKLEELRPLYASTGSAIPSPRSYSGSASALEMGSLSPIALGSPSVMIPPSSTTPLTPSGASSAVAAASMWQTQSNVSVPTLQLPKSRFNTAITAGDFDSSMAMLQVETQRRRQQQLKMDEISGLSSPSNWKNSMPNSPSFQVSLSDHTEDIFGSHDPSILHNKFHGISLDAAGLPQLQSPTGIQMHPSMNQQQQNYSSCHSPTYRFDRSGEAAAAALNARAAAFSKRSQSFIERSVANRYSELLSPPNPYAFSNWGSPDGKLNWAIHGEELNKLRKSSSFGFRSSSTPLTTAATQAPENDDEPDVSWVNSLVKDVTPQESGQYKAEYQQRKLQYNLNNGTNAIPAWLEQMYMEQEQMVH 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01341 671 MobiDBLite consensus disorder prediction 591 609 - -
Car02g01341 671 ProSiteProfiles Zinc finger C3H1-type profile. 257 284 IPR000571 GO:0046872
Car02g01341 671 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 13 670 - -
Car02g01341 671 SMART c3hfinal6 257 283 IPR000571 GO:0046872
Car02g01341 671 SMART c3hfinal6 292 315 IPR000571 GO:0046872
Car02g01341 671 MobiDBLite consensus disorder prediction 591 616 - -
Car02g01341 671 PANTHER UNKEMPT FAMILY MEMBER 13 670 IPR045234 -
Car02g01341 671 ProSiteProfiles Ankyrin repeat region circular profile. 97 131 - -
Car02g01341 671 Gene3D - 9 163 IPR036770 -
Car02g01341 671 ProSiteProfiles Ankyrin repeat profile. 97 132 IPR002110 GO:0005515
Car02g01341 671 SUPERFAMILY Ankyrin repeat 53 171 IPR036770 -
Car02g01341 671 MobiDBLite consensus disorder prediction 434 454 - -
Car02g01341 671 SMART ANK_2a 97 129 IPR002110 GO:0005515
Car02g01341 671 SMART ANK_2a 62 92 IPR002110 GO:0005515
Car02g01341 671 Pfam Ankyrin repeats (many copies) 63 121 IPR002110 GO:0005515
Car02g01341 671 Gene3D - 258 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01341 Car-Chr2 39505871 39509054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01341 8 666 C2H2 Transcription Factor Family AT5G12850 37.083 6.19e-134 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car02g01341 Ank_4 2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01341 - - aprc:113846970 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01341 02 39505871 39509054 Car02g01341 02 39505871 39509054 ECH
Car05g01273 05 56314415 56317428 Car02g01341 02 39505871 39509054 ECH