Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01313 ATGAAGTGGGAAATGGAAATTCTCCCTCCTGAATCATTCACTCAAAATACTAATTGGTGTATAGAAGAGAACATGAGTACAAAATGGACACATGAAGAGAACAAACTATTTGAAAATGCTCTTGCAGTTCATGATAAGGATACACCAGATAGGTGGCACAAAGTGGCTGAAATGATACCAGGAAAAACAGTTTGTGATGTTATGAGACAGTATAAGGAATTAGAAGTAGATGTTTGTAATATAGAAGCTGGTTTGGTACCAGTTCCTGGATATAATAATACTCCTACTTTACCCTTTACTTTAGATTGGGTCAACACTTCTGGAAATGGAAAGAGATCTTCTCTAGTTAGAGGTCCTGAGCATGAAAGGAAGAAAGGTGTGCCTTGGACTGAAGAGGAACACAAattgtttctactaggtctaaagaaatatggaaaaggtgattggcgaaatatttctcgcaatttcgtcatcactagaactccaactcaagttgcaagtcatgctcagaaatatttcataaggcaactttcaggtggcaaagataagagaagagctagcattcatgacataacAACAGTTAATCTCTCAGAAACAATTGGAACTTCTTCTTCAGAAGACACCAATAATAGATCAACTTCACCACAAAATTCTATGTTGATGCAGCCAACTTCTTCTACTACAACAAATTTTCATTGGAGGAATAATCAACCAAATGTTATGGCTTTCAATCATGGACATGAACAAGCCTTCATGGCTCCTCATGGTGTTGATTCCTATGAGGTTAAAATGGAAGACCAAGATTTTCACAAGGGTACTATTCATGAGTCTTCTTATCCACATAACTTGGTTTTCCAAATGCAACATTCATCACAACATTATTCTCATGCATAA 894 0.2964 MKWEMEILPPESFTQNTNWCIEENMSTKWTHEENKLFENALAVHDKDTPDRWHKVAEMIPGKTVCDVMRQYKELEVDVCNIEAGLVPVPGYNNTPTLPFTLDWVNTSGNGKRSSLVRGPEHERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLSETIGTSSSEDTNNRSTSPQNSMLMQPTSSTTTNFHWRNNQPNVMAFNHGHEQAFMAPHGVDSYEVKMEDQDFHKGTIHESSYPHNLVFQMQHSSQHYSHA 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01313 297 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 124 176 IPR006447 GO:0003677
Car02g01313 297 CDD SANT 128 173 IPR001005 -
Car02g01313 297 MobiDBLite consensus disorder prediction 199 226 - -
Car02g01313 297 ProSiteProfiles SANT domain profile. 129 177 IPR017884 -
Car02g01313 297 Pfam Myb-like DNA-binding domain 128 173 IPR001005 -
Car02g01313 297 Pfam Myb-like DNA-binding domain 28 72 IPR001005 -
Car02g01313 297 SUPERFAMILY Homeodomain-like 27 81 IPR009057 -
Car02g01313 297 CDD SANT 28 74 IPR001005 -
Car02g01313 297 SUPERFAMILY Homeodomain-like 123 176 IPR009057 -
Car02g01313 297 Gene3D - 21 88 - -
Car02g01313 297 ProSiteProfiles SANT domain profile. 24 79 IPR017884 -
Car02g01313 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 177 IPR017930 -
Car02g01313 297 SMART sant 125 175 IPR001005 -
Car02g01313 297 SMART sant 25 77 IPR001005 -
Car02g01313 297 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 273 IPR043363 -
Car02g01313 297 ProSiteProfiles Myb-like domain profile. 121 173 IPR001005 -
Car02g01313 297 Gene3D - 127 177 - -
Car02g01313 297 ProSiteProfiles Myb-like domain profile. 28 75 IPR001005 -
Car02g01313 297 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01313 Car-Chr2 39144374 39147570 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car02g01313 Myb_DNA-binding 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01313 - - cam:101514273 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01313 02 39144374 39147570 Car02g01313 02 39144374 39147570 ECH
Car02g01313 02 39144374 39147570 Car02g01672 02 45681382 45683814 ECH
Car05g01239 05 55631520 55634281 Car02g01313 02 39144374 39147570 ECH
Car03g01248 03 56775876 56778604 Car02g01313 02 39144374 39147570 ECH
Car06g02483 06 28012562 28014539 Car02g01313 02 39144374 39147570 ECH