Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01303 ATGGGTTGTTTATGCGATTTTTGCGGAGAGCGGAGATCCTTGGTGTACTGCCGCTCTGATGCTGCATCCTTATGTCTGTCATGTGATCGAAAGGTTCATTCTGCTAACGCACTTTCTAAGCGTCATTCAAGAACACTTGTATGTGAGAGGTGTAATTTACAACCTGCACATGTGAGGTGTGACGAAGAGAAAGTTTCACTTTGTCAGAATTGTGATTGGTTGGCTCATGGTACCGATCCATCTTCTTCAACACACAAGAGGCAATCAATGAATTGCTACTGTGGTTGTCCTTCAGCTGCCGAGCTTTCTTCAATATGGTCCTTTTTCTCAGACATCCCTTCTATGGGCGAAGCATGTGAGCAGCAACTCCGTTTGATGAGCATTAGTGAGAAGAACGGCGAAAGTGCTTCGGCTCCTCTAGAAAGCCAGTGTGTGTCTGTTATAGCTCAAGTGGCCGATCTTCCCAGCAGGGGTAAATCTAAAGTCGGCACATCTCCAATACCTGAGTCCAGCGCAGAACCTCATATTCAGGACAAGGCGCCTGAGCCTTCGAATGAATGTATGCCCAAGTTACTATGTCCAAGTAAAAAATCTCCTGCACTATGTGAAGATGATAATTTGTATGATGATTTCAACATAGACGAGATGGATCTTGAACTTGAGAACTATAAAGAACTGTTTGGTGTTGATCTCAGTCACACTGATGAATTTTTGGAAAAGGGCGGTATTGATAGCTTATTTGAGACTATAGACATGTATGCCAGTGCCGGTGATTTAAATTGTCAGGGTGCTGTTGCTGCTGAGGGGTCATCAGCTGGGTTTGTTGGTGCTATCCAACCGGCATGCAGCAACACAGCATCTGCAGATTCAATATTAAGTAGTAAAACTGAACCGATTCTTAATTTTACGGCAAGGCAATCCCAATCAAACATTTCATTTTCCGGTGGTACCAAAGATGCTAGTGCTGGTAACTCTCAAGACTGTGGCGGTTCTGCAATGCATGTCTCGGGGGAGCCTCCCTGGCGTGTTCCTTTCGCTGAGAGTTCTACTCAATCTGCTAATCGCAGCAATGCTGTCATGCGTTATAAGGAAAAGAAAAAGAATCGAAAGTTTGATAAGAAAGTAAGATATGCTTCTCGGAAGGCTAGGGCTGATGTCAGAAAACGTGTGAAGGGCCGGTTCGTCAAAGCTGGTGAATCATATGACTATGACCCTTTGAACGAAACCAGAAGCTTCTGA 1239 0.4455 MGCLCDFCGERRSLVYCRSDAASLCLSCDRKVHSANALSKRHSRTLVCERCNLQPAHVRCDEEKVSLCQNCDWLAHGTDPSSSTHKRQSMNCYCGCPSAAELSSIWSFFSDIPSMGEACEQQLRLMSISEKNGESASAPLESQCVSVIAQVADLPSRGKSKVGTSPIPESSAEPHIQDKAPEPSNECMPKLLCPSKKSPALCEDDNLYDDFNIDEMDLELENYKELFGVDLSHTDEFLEKGGIDSLFETIDMYASAGDLNCQGAVAAEGSSAGFVGAIQPACSNTASADSILSSKTEPILNFTARQSQSNISFSGGTKDASAGNSQDCGGSAMHVSGEPPWRVPFAESSTQSANRSNAVMRYKEKKKNRKFDKKVRYASRKARADVRKRVKGRFVKAGESYDYDPLNETRSF 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01303 412 CDD Bbox1_BBX-like 4 47 - -
Car02g01303 412 SMART bboxneu5 4 47 IPR000315 GO:0008270
Car02g01303 412 SMART bboxneu5 48 90 IPR000315 GO:0008270
Car02g01303 412 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Car02g01303 412 ProSiteProfiles Zinc finger B-box type profile. 4 47 IPR000315 GO:0008270
Car02g01303 412 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 412 - -
Car02g01303 412 MobiDBLite consensus disorder prediction 313 334 - -
Car02g01303 412 MobiDBLite consensus disorder prediction 157 184 - -
Car02g01303 412 Pfam CCT motif 355 397 IPR010402 GO:0005515
Car02g01303 412 ProSiteProfiles CCT domain profile. 355 397 IPR010402 GO:0005515
Car02g01303 412 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 412 - -
Car02g01303 412 MobiDBLite consensus disorder prediction 313 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01303 Car-Chr2 39020669 39026303 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01303 1 412 C2C2-CO-like Transcription Factor Family AT3G07650 51.294 5.77e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Car02g01303 CCT 5e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01303 - - gmx:100783016 605.905