Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01292 ATGGGCGCCGTCGATTGTTTACCTCCGTCACATGCGGAGGAGATGGCTGTGCTTTCTTTAAACAAGCTTCCGTTAGGTTTCCGGTTCCGTCCTACTGATGAGGAGCTCATCGATTTCTATCTCCGACTTAAAATCAACGGAAACGGCGATGAAGTTTGGGTTATCCGTGAAATCGACGTGTGTAAATGGGAGCCTTGGGATTTACCTGACTTGTCAGTGGTAAGGAACAAGGATCCAGAGTGGTTTTTCTTCTGCCCGCAAGATCGTAAGTATCCAAATGGAAGCAGGTTGAACCGAGCGACAAATCATGGGTATTGGAAGGCGACGGGTAAAGATCGAAAGATTAAGTCTGGCCCTACCTTGATTGGAATGAAGAAGACTCTGGTTTTCCATGCTGGTCGTGCTCCGAAGGGGAAGAGGACTAATTGGGTTATGCATGAGTATAGGCCTACCTTGAAGGAGCTTGATGGTACCAACCCTGGACAGAACCCATATGTCCTCTGTCGCTTGTTTAAGAAGCAAGATGAGAGTATTGAAAGTTCAAACTGTGGTGAAGTGGAGCAGACTGCTTCAACTCCTATGACTGCCAATTACTCTCCCGAAGAAATACAGTCTGATCCAAATGTGGTTCCTGGTGCATCTTCCTCACAGGTCACAGAAGACTATAAGCACCTTGCAGCTATCCCTGAGAACTCCGAGGAAGCAATATCCAACTTTTTAACCCCAGCTGATTGCTATAGGGATGCATGCAATGCTTCTGATGCACAAAATCAAATTGTAACAACAGCTGCAGAGGAGGATCAGCTGTTTAACTTGGACATATTTGATAGCCCGCAATTTGAGCAATTGGATGATAAATTGTTCTCCCCAGTCCACGCACATTTTCCACAAGATTTTTTTTATGAAACCAACAATGAAGTAGAATTTCAGTATGGTACGAACGAAACAGATGTTTCAGACTTTTTCAACTCGGCTGTTAATTGGGACGAGGTCTCCCGCGAGGCGTCTAGCAGTCTAGAGCTGAAGTCGGACTTGCTTCATGTTAAGGACAATGGGTCGTGCAGTGACTCGGAAGTGGAAATGGCCAATATGATGCATCTGCAACCATTACATGCTTATCCTGAGGGGGTGACTCCGACTCCGCAAAATAGCGATGCAGGGCTGTTTTATTCATCCTTTTTTAGTACTGGCCCGACACCTACTGTAGTCGATGAATGTATGGGCCAAACACCCGCTGTAGTCGATGAATCTATGGGCCAAACACCTGCTGTGGTCGATGGATATGAGCAAATGAGGAATTTGGATACTGTAGTCCAAGGTGACACCGGAATCAGGATAAGGACTCGACAAAGACGAAATGAACAGCCAATCACGAACCCAGTGATGCCAGCACAAGGTAGTGCACCGCGGAGAATACTATTGGGAGGATTTGTTACGCATTCCCTTGTTTCTGAGGAAACGACAAAAGATAGGAGTTCTGCCCCAGTAAACCATAACTCGGAAACTATCATTTCTAGGGAAAAGCAAACTTCAGAAAAACATGCTGCTGGGGAGAGTGCCACGGACACCAACATCAATGATGTGGATGAACTGGAGAAGACGTCTCTCGCATCAGACGACACAAGAAAGATCTCTCAGCAACATGTTACAACTACAGAATCCATATTGGAGTGGAAAGACTCTTTATTAGGAAGAAGGGTCTGTTACTCGTCAAAGATTTCGTCGAATCGTGCCATGTGGTCTTCGGTTCTTGCAGTTTCTGCCATTGTACTGGTCTCACTAGTATTGTTTGTTAATATCTGGGGATATCTTAGAATTGAAACTGCTCATTAG 1833 0.4544 MGAVDCLPPSHAEEMAVLSLNKLPLGFRFRPTDEELIDFYLRLKINGNGDEVWVIREIDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGSRLNRATNHGYWKATGKDRKIKSGPTLIGMKKTLVFHAGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKQDESIESSNCGEVEQTASTPMTANYSPEEIQSDPNVVPGASSSQVTEDYKHLAAIPENSEEAISNFLTPADCYRDACNASDAQNQIVTTAAEEDQLFNLDIFDSPQFEQLDDKLFSPVHAHFPQDFFYETNNEVEFQYGTNETDVSDFFNSAVNWDEVSREASSSLELKSDLLHVKDNGSCSDSEVEMANMMHLQPLHAYPEGVTPTPQNSDAGLFYSSFFSTGPTPTVVDECMGQTPAVVDESMGQTPAVVDGYEQMRNLDTVVQGDTGIRIRTRQRRNEQPITNPVMPAQGSAPRRILLGGFVTHSLVSEETTKDRSSAPVNHNSETIISREKQTSEKHAAGESATDTNINDVDELEKTSLASDDTRKISQQHVTTTESILEWKDSLLGRRVCYSSKISSNRAMWSSVLAVSAIVLVSLVLFVNIWGYLRIETAH 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01292 610 Pfam No apical meristem (NAM) protein 24 149 IPR003441 GO:0003677|GO:0006355
Car02g01292 610 ProSiteProfiles NAC domain profile. 23 173 IPR003441 GO:0003677|GO:0006355
Car02g01292 610 SUPERFAMILY NAC domain 15 173 IPR036093 GO:0003677|GO:0006355
Car02g01292 610 Gene3D NAC domain 32 178 IPR036093 GO:0003677|GO:0006355
Car02g01292 610 MobiDBLite consensus disorder prediction 488 504 - -
Car02g01292 610 MobiDBLite consensus disorder prediction 181 215 - -
Car02g01292 610 MobiDBLite consensus disorder prediction 180 215 - -
Car02g01292 610 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 16 454 - -
Car02g01292 610 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 16 454 - -
Car02g01292 610 MobiDBLite consensus disorder prediction 485 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01292 Car-Chr2 38663307 38667221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01292 15 515 NAC Transcription Factor Family AT4G35580 39.535 7.00e-98 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car02g01292 NAM 2.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01292 - - gmx:100778903 748.043