Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01250 ATGGGTAGGCGAAAAGGTAAACCACATCGATCGAGCGGGATAATACTAGAAACAAATGCTACTGCCGAAACAGCATTGGATAAACATAATATTGTAGAAGGAGGAGAAGAAGAAAATAATGATTTTGGTGATATTGATAAACCTTATTTTGTCGAGGTTGAGCGGTCTGGTTGGTTGTCAGATGAACACCTTGATATTTCTGAAGTTGTTCTAAGGGATTTAAATTTAAGAGAAGGTTTTCATGGTTTTGAACTGTCTGAGGATTTTTATCAGGATCCACAATTCTCGTTAAGATTTCGATTGTGTAATGTCAGTGATGTTCTTGGTCGAATCAAACTGGGCCATTGGCCAGTGTTACCGTATACCGATATTCATCTAGAGTTTGTTAAAAAAGCTATAGTTGACAATACTGAAACATGCACAGTGTTGTTATCTGGTATTTTTGATGGACCTGATGAAGGTGTTTCTGGTCTTGTTCACTTGGCAAGTTTGAAATTTGTTACATTGAGGGCAGTTCTTGGAATTAGGGTTTCTAAGGACATTCCTTCCCTCAGGGTGAGGGTGGAGGTACTAAAGAGTACCTTCGATGCATGTGAGTCACTTCTCGAGGGTTCTAGACAACTATGGAAAAAGAGTATGATGAATCTCATGTCTTGGTTACGACCAGAAATAATGACTTCAGAAGTTAGGTATGGGTTTAGTAGCTATATTGATATGGAAGTTGATTCGCAGACAGAGAGGGTAGATGACGGTGGCTATGCAAGTAAATGCTCGAGGTTTGATCCTGCTGGTTTTTATGAAGCCATTAAGCCTTCAAAAGCAGAACCAATGATTGAAGATGACATACCTGAATTACTTCCTGAACTGAGGCCATATCAACGTCGTGCAGCTTTCTGGATGGTAAAACGAGAAAAAGCAATGGAAGAACGTCAGGGTGACATTGAAAGAAATCAGTTTCATTCTCCATTATGTGTGCCGGTGGATTTTCTAGACACAGGTTCTAAAATGTTTTTCAATCCATTCAGTGGAAATATTTCCTTGTGCCCAGAGACTTCATCACCGTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGATTAGGAAAAACTGTAGAATTGCTTGCCTGCATCTTTGCACACCGAAGATCAGCATATGGAAATGACATACTAATTGATTCGGTTCCCCAAGTCAACTGTGACAAAAAAGTTGCTTTGAAAAGACTCAAAAAAGAGCGCGTGGAGTGCGCATGTGGAGCTGTGAGCGAAAGTCTCAAATATCAAGGACTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCACCTAAAGGGAAGTCACTGAAATCAAAAAAAGGATTGGAAAGCAAGACATATAAAACTACCATAGCTGAGAGGAATGGGGAATATGTATGTCTGATGTGCTCTGAACTACTACAAGCTACTGAACCTCCGATTGCTTCTGGTGCCACTCTCATTGTCTGCCCGGCTCCTATTTTGCCCCAGTGGAATGATGAAATTATACGTCATACCCGTCCAGGAGCCTTGAAAACTTGTATTTATGAAGGTGTGCGAGACACATCTTTCTCCAATACATCTCTGATGGATATCAGTGATCTTGCCAGTGCGGACATCGTACTAACTACCTACGATGTGCTTAAAGATGATTTGTCCCATGATTCTGATAGACATATAGGCGACCGGCACCTTTTGAGATTTCAGAAAAGGTACCCAGTTATTCCAACCTTTCTTACCAGAATATACTGGTGGAGAGTTTGTTTGGATGAGGCTCAAATGGTGGAGAGTACTGTTGCTACCGCTGCTACTGAAATGGCTCTAAGACTCCATTCCAAGCATCGTTGGTGTGTCACAGGGACCCCAATTCAGAGAAAGCTTGATGACTTATATGGACTCCTAAGATTCATTAAAACTAGTCCTTTCAATATTTACAGATGGTGGACTGAAGTTATTCGAGATCCTTATGAGAAGGGAGATATGGGAGCTATGGAATTTACTCACAGAATTTTCAAACAAATCATGTGGCGTTCTTCTAAACAACACGTTGCAGATGAATTGGAGCTTCCCTCCCAACAAGAGTGCCTCTCTTGGCTTACACTATCACCAGTAGAAGAGCACTTTTATCAGAGGCAACATGAAGCTTGTGTTAGAGATTCCCATGAAGTTATTGAAAGTTTGAGAAGCGATATTCTTAATAGAAAAGTCCCAGATTCTGTCTCTTTGAGCGGTTCCTCTGATCCTTTTATCACTCACACGGAGGCAGGGAAGCTATGGAATGCTTTGTTGAAGCTTCGTCAGGCTTGTTGTCATCCCCAGGTTGGAAGTTCCGGGTTGCGTTCCATGCAGCAGTCACCTATGACAATGGAGGAAGTACTAATGGTCCTTATAAGCAAGACCAAGGTAGAAGGTGAGGAAGCTCTCAGGAGGTTAGTTATTGCTCTGAACGCGCTTGCAGCAATAGCTACTATACAAAATGATTTTTCTCAAGCTGCTTCGCTTTACAATGAAGCTCTTACTTTGGCCGAACAGCACTCCGAAGATTTCCGTCTGGATCCTCTGTTAAATATCCACATTCATCATAATCTTGCTGACATATTCCCCCTGGCTGAAAATTTTGCTTTGAACTTGTCATCCAAAGGAAAGCAATTATCCGGAAATTCTGCAGTCAATACAACCAAAAAGCATTTTATTGTAAAAGTTGATCATGATCAAGTGAAGAGGCATAAAATAAGTAACTGTGATGATGACATAAGTTTAACAGTGGCTTCTGCAGAACCATCAAATTTTGCATCTAGCCTTTCAGAAAATGACTTAAATGATAGGGAATATGATAATTCGACAGCCAGTTCGGTCAAATATCTAATAGCAGAATGTGATGATTCAAAACAGAAATACTTATCTGTGTTCAGTTCAAAGCTATCTGCAACTCAGCAGGAGTTTCAAAATTCTTACGTGCAGGTTTGTAACGCATATCGTGAAACCAGCACAGATCAAAATACATTTTGGTGGTTAGAAGCACTTAATCACGCTGAGAAGAACAAGGATTTCTCAACTGAGTTGATTAGAAAGATCGAAGAAGCCATCTCAGGAAATTCAAAATCGTCAAGAGTAGCTGCTCGTTTTCGGAGCATAAGCTCTCTGAAGTATCAAATTCAAACCGGTTTGGATCAGTTAGAAGCCTCTAGGAAAGTGCTATTAGATCGTTTGCTAGAAATTGACCAGACAATGGAAAAACCAAAAGATGAAGATATTGAGCGCGTGGGTAAATGTCGAAATTGTCAACCTCATTGTGATGGCCCCCCCTGTGTTCTGTGTGAAATAGATGAATTGTTTCAGGACTATGAAGCTAGACTCTTTGTTCTTAAGAACGAACGTGGAGGGATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAAAAGAAAAACTTTGCATTGAATCATTTCCTCTCAAAGCTATCACAATCTAATCACAGTTCATCAGCATCTGATATTGATCATGAAGAGTCCAAAAAAAGGAATGTTAGACAGAGAGTTGTGACTACAAGATCAGCATCTATGCTGGAGGTTCTTCTTGGAGTTATAAAGAACTGTTGCAAGACTCAGTTCGGAAGGGACAGTGTGTCAGCAGCCACCAAGCATTTACATATTTTTGAGGGAATGCGAAAGGAATTTGTCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAATATCTTCGTGCACATGATGAAATAAAGATGGCGGTTTCTCGTTTACACTTAAGGGCGAATGAAGATGATAAAGCTCTCGATGCTTTAGGTGAAAATGAATTATCTGCAGCTAGCTCAAACTTTTCCCAGGAGAAGTTTATGTCATTGAACTTGTTGGCACAGATAAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAAATGCCATTGGAAAGTTTAGATAATTCTTCACTCACTCAAGAGATAAATGCTACGTCAAACTCTACGGAAGAAAAGGGGGTCCTCATATCTAAAACTTATGAGGAAACATGCCCAGTTTGCCAAGAAAAGCTAGGCCCTCAGAGAATGGTGTTTCAATGTGGGCATCTTACTTGTTGTAAATGTTTATTTGCTTTGAGTGAGCAAAGACTTCAACATAGCAAGACCCGTAATTGGGTGATGTGCCCTACATGTCGACAGCATACCGATTTTGGAAACATTGCCTATGCTGTTGATGCACAAAAGGAATCTCCCAATTCTTCAATGCTGCATACAATTGACAGCTATGAAAAACATGAAGCATCCATTACTGTGAAAGGCTCATATGGAACCAAGATTGAAGCAGTCACAAGAAGAATCTTGTCGATAAAGGCTACAAATCATAAATCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAACATGCCTTTGCCACCAATAACATCACCTTCATCCGGATGAAGGGAGGCAGGAAAGCACACAGTGCCATCAGTCAATTTAGAGGAAAACAGAATGGCACAAAAGGATGTGAAGGGTCTGAACCAAAATCAATCCAGGTGTTATTGCTTTTAATCCAACATGGAGCCAATGGCCTCAATCTTTTGGAAGCACAACACGTGGTCCTTGTTGAGCCATTACTCAATCCAGCTGCTGAAGCACAAGCAATCAGTCGCGTACATCGGATTGGACAGAAGAATAAGACCCTCATCCATCGATTCTTAGTAAAAGACACAGTTGAAGAGAGCATATACAAATTAAACAGAAGCAGGAGCAACCATTCATTCATTAGTGGAAACACAAAAAATCAAGATCAACCTGTTTTGACACTTAAGGATGTGGAGTCCTTGTTGGCAACAGCACCACTATCAATGCAAGAAATTGATGAAAGTCCTAATAATACAAATACAAACTTGAGACAATTTCCACCATCAATTGCTGCAGCTATAGCTGCTGAGAGGAGACATAACGAGCAAAGAACATGA 5013 0.4041 MGRRKGKPHRSSGIILETNATAETALDKHNIVEGGEEENNDFGDIDKPYFVEVERSGWLSDEHLDISEVVLRDLNLREGFHGFELSEDFYQDPQFSLRFRLCNVSDVLGRIKLGHWPVLPYTDIHLEFVKKAIVDNTETCTVLLSGIFDGPDEGVSGLVHLASLKFVTLRAVLGIRVSKDIPSLRVRVEVLKSTFDACESLLEGSRQLWKKSMMNLMSWLRPEIMTSEVRYGFSSYIDMEVDSQTERVDDGGYASKCSRFDPAGFYEAIKPSKAEPMIEDDIPELLPELRPYQRRAAFWMVKREKAMEERQGDIERNQFHSPLCVPVDFLDTGSKMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRRSAYGNDILIDSVPQVNCDKKVALKRLKKERVECACGAVSESLKYQGLWVQCDICDAWQHADCVGYSPKGKSLKSKKGLESKTYKTTIAERNGEYVCLMCSELLQATEPPIASGATLIVCPAPILPQWNDEIIRHTRPGALKTCIYEGVRDTSFSNTSLMDISDLASADIVLTTYDVLKDDLSHDSDRHIGDRHLLRFQKRYPVIPTFLTRIYWWRVCLDEAQMVESTVATAATEMALRLHSKHRWCVTGTPIQRKLDDLYGLLRFIKTSPFNIYRWWTEVIRDPYEKGDMGAMEFTHRIFKQIMWRSSKQHVADELELPSQQECLSWLTLSPVEEHFYQRQHEACVRDSHEVIESLRSDILNRKVPDSVSLSGSSDPFITHTEAGKLWNALLKLRQACCHPQVGSSGLRSMQQSPMTMEEVLMVLISKTKVEGEEALRRLVIALNALAAIATIQNDFSQAASLYNEALTLAEQHSEDFRLDPLLNIHIHHNLADIFPLAENFALNLSSKGKQLSGNSAVNTTKKHFIVKVDHDQVKRHKISNCDDDISLTVASAEPSNFASSLSENDLNDREYDNSTASSVKYLIAECDDSKQKYLSVFSSKLSATQQEFQNSYVQVCNAYRETSTDQNTFWWLEALNHAEKNKDFSTELIRKIEEAISGNSKSSRVAARFRSISSLKYQIQTGLDQLEASRKVLLDRLLEIDQTMEKPKDEDIERVGKCRNCQPHCDGPPCVLCEIDELFQDYEARLFVLKNERGGIISSAEEAVDFQKKNFALNHFLSKLSQSNHSSSASDIDHEESKKRNVRQRVVTTRSASMLEVLLGVIKNCCKTQFGRDSVSAATKHLHIFEGMRKEFVHARSLALAQAQYLRAHDEIKMAVSRLHLRANEDDKALDALGENELSAASSNFSQEKFMSLNLLAQIKGKLRYLKGLVQSKQKMPLESLDNSSLTQEINATSNSTEEKGVLISKTYEETCPVCQEKLGPQRMVFQCGHLTCCKCLFALSEQRLQHSKTRNWVMCPTCRQHTDFGNIAYAVDAQKESPNSSMLHTIDSYEKHEASITVKGSYGTKIEAVTRRILSIKATNHKSKVLVFSSWNDVLDVLEHAFATNNITFIRMKGGRKAHSAISQFRGKQNGTKGCEGSEPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFLVKDTVEESIYKLNRSRSNHSFISGNTKNQDQPVLTLKDVESLLATAPLSMQEIDESPNNTNTNLRQFPPSIAAAIAAERRHNEQRT 1670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01250 1670 Pfam SNF2-related domain 292 785 IPR000330 GO:0005524|GO:0140658
Car02g01250 1670 CDD DEXQc_SHPRH 289 689 - -
Car02g01250 1670 SUPERFAMILY RING/U-box 1351 1408 - -
Car02g01250 1670 CDD SF2_C_SNF 1447 1584 - -
Car02g01250 1670 Coils Coil 1019 1039 - -
Car02g01250 1670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 1623 IPR027417 -
Car02g01250 1670 SMART helicmild6 1481 1573 IPR001650 -
Car02g01250 1670 Gene3D - 480 710 IPR038718 -
Car02g01250 1670 Gene3D - 352 400 IPR038718 -
Car02g01250 1670 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1453 1624 IPR001650 -
Car02g01250 1670 Pfam Helicase conserved C-terminal domain 1454 1573 IPR001650 -
Car02g01250 1670 SMART ring_2 1356 1403 IPR001841 -
Car02g01250 1670 ProSiteProfiles Zinc finger RING-type profile. 1356 1404 IPR001841 -
Car02g01250 1670 Gene3D - 1426 1655 IPR027417 -
Car02g01250 1670 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1652 - -
Car02g01250 1670 SMART PHD_3 414 482 IPR001965 -
Car02g01250 1670 CDD PHD_TCF19_like 416 481 - -
Car02g01250 1670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 479 IPR013083 -
Car02g01250 1670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1342 1425 IPR013083 -
Car02g01250 1670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 688 IPR027417 -
Car02g01250 1670 SUPERFAMILY FYVE/PHD zinc finger 411 483 IPR011011 -
Car02g01250 1670 SMART ultradead3 285 658 IPR014001 -
Car02g01250 1670 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01250 Car-Chr2 37689474 37722199 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01250 493 794 RAD5 or RAD16-like Gene Family AT5G43530 32.119 2.77e-33 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car02g01250 SNF2_N 8.3e-85 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01250 K15710 - gmx:100776659 2705.24