Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01249 ATGAATAGCCAAGGAGGTGGTAACAACCATGCAAACTCAGAAGATTTTGAAGAACAAGCCCCTCTTGTAGAGCCAACAGTTTATGCTCCTGATCCAGAACTAAGATCAGTGATAGAGACTCGGATTCAAATTGCTCTAGAACGTCAACGATTGGGACAACCTTTAACATTTGAGGATGTAATGGCCCTCGATTATGAAGATGCGTTACGTCATCTTAACCAACAAAATCAACGCCAACATGAGcaacaaccacaaccacaactagaagaagaacaGATAGACAATCCAATATTGAGAGAAGAAGAAATTATGAACAATATTGGACGAGAATATTTTGAGCCTATCGATGCTGAGAGTGTGCAAAATATGGAATTATGTAGCATTTGTCAGGTGAACTATGACATTGGTGACGAAATTGGAAGATTAGACTGTGCACATAAATATCACATGAGTTGCATCACACAATGGATCCTAAGAGAGAACAGATGCCCTCTTTGCAATCGAATGGGATTATATTTTAATTAA 525 0.3619 MNSQGGGNNHANSEDFEEQAPLVEPTVYAPDPELRSVIETRIQIALERQRLGQPLTFEDVMALDYEDALRHLNQQNQRQHEQQPQPQLEEEQIDNPILREEEIMNNIGREYFEPIDAESVQNMELCSICQVNYDIGDEIGRLDCAHKYHMSCITQWILRENRCPLCNRMGLYFN 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01249 174 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR1-LIKE 67 168 - -
Car02g01249 174 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 67 168 IPR045191 GO:0061630
Car02g01249 174 Pfam Ring finger domain 126 167 IPR001841 -
Car02g01249 174 MobiDBLite consensus disorder prediction 1 15 - -
Car02g01249 174 SMART ring_2 126 166 IPR001841 -
Car02g01249 174 Coils Coil 62 82 - -
Car02g01249 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 170 IPR013083 -
Car02g01249 174 MobiDBLite consensus disorder prediction 1 28 - -
Car02g01249 174 SUPERFAMILY RING/U-box 125 169 - -
Car02g01249 174 ProSiteProfiles Zinc finger RING-type profile. 126 167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01249 Car-Chr2 37679848 37683025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01249 98 171 C3H Transcription Factor Family AT2G15530 38.961 9.38e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01249 - - cam:105851629 327.791