Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01217 ATGGGGAGAGGAAAGATCGTGATAAGGAGGATTGATAATTCGACGAGCAGGCAAGTTACGTTTTCGAAGAGAAGAAACGGTTTGTTGAAGAAGGCGAAGGAACTTGCAATTTTGTGCGATGCTGAAGTAGGAATTATAATTTTCTCAAGCACTGGAAAACTCTATGATTTCGCTAGCACCAGCATGAGATCAGTAATTGATCGATTCAACAAATCAAAAGAGGAAAGTAATCAACTTGGGAATGCAGCCTCAGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTGCATAATTTGCAAGAAAGTCACCGGCAAATAATGGGTGAAGAATTATCAGGTTTAACAGTCAAAGAATTAAGAAGTTTAGAGAACCAATTGGAAATCAGCCTTCGTGGTGTTCGTATGAAAAAGGACCAACTTTTAACAAATGAAATACAAGAACTAAATCGAAAGGTAAGTCCTGAAATGGAGAAATTGAGAACTTATTCATTATTTAAAACATATTTTTATATTCTGCAGGGAGACATCATACAACAAGAAAATGAGGAACTGTATAAGAAGGTCTATGGAACAAAACATGAGAATGGAATAAACAGAAATTCTGTTTTCACGAAACCTTCAGACTACAACTGCTTTGATGCATTTGCAGGAAATCAGTGTTCCTCACCAGCTATCAAGAAAAATGGACCCGGATTTTAA 711 0.3671 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGIIIFSSTGKLYDFASTSMRSVIDRFNKSKEESNQLGNAASEIKFWQREAAMLRQQLHNLQESHRQIMGEELSGLTVKELRSLENQLEISLRGVRMKKDQLLTNEIQELNRKVSPEMEKLRTYSLFKTYFYILQGDIIQQENEELYKKVYGTKHENGINRNSVFTKPSDYNCFDAFAGNQCSSPAIKKNGPGF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01217 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 207 - -
Car02g01217 236 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 207 - -
Car02g01217 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car02g01217 236 Pfam K-box region 85 157 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car02g01217 236 ProSiteProfiles K-box domain profile. 86 199 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car02g01217 236 Coils Coil 79 106 - -
Car02g01217 236 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Car02g01217 236 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Car02g01217 236 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Car02g01217 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car02g01217 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car02g01217 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car02g01217 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car02g01217 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car02g01217 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01217 Car-Chr2 36811812 36832111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01217 1 193 MADS-box Gene Family AT4G37940 67.358 8.01e-86 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car02g01217 K-box 1.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01217 K09264 - gmx:100778970 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01217 02 36811812 36832111 Car02g01217 02 36811812 36832111 ECH