Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01214 ATGTCCTCACAAGCAGTGCAGTTGCATATCAAGGATAATCATGTGGTTATGGACAATGGTGTAGTACAAGTGTATTTATCTAATCCGGGTGGATTTGTGACTAGAATACAATATAATGGCATTGATAATCTGCTTGAAGCTCTTAACGAAAAGAATAATAGAGGGTATTGGGATGTCGTTTGGAGTGAAGCAGGAAGTACCGGAACAACTGGGACATTTGAGCGGATCGTAGGAACAAGTTTTAATGTTATAGTGGAAACAGAAGAACAAGTGGAAGTATCATTTACAAGAATATGGGATTCATCTCTAAAGGGAAAGCAATCACCTCTAAATATAGACAAAAGGTATGTGATGCTTTGTAATTCCTCAGGCTTCTACTCATATGCTATCTTTGAACACCTAAAGGAGTGGCCTGCTTTCAACATACCTCAAATTAGGATTGTTTATAAACTTCGAAAAGACAAGTTTCATTACATGGCAGTAGGGGATAATAGACAAAGGCTAATGCCTCTCCCTGATGATCGATTACCTGGAAGAGGAGAAGAACTTGTTCCCCCAGAAGCTGTTTTGCTTGTAAATCCTGTGGAGCCTCAGTTCAAAGGAGAGGTGGATGACAAATATCAATACTCATGTGAGAACAAAGATCTTAAGGTTCATGGATGGATAAGTCAAGAATCTGAAACCAATCCAGCCATGGGGTTTTGGGTAATCATACCCAGCAATGAGTTTCGATCAGGTGGCCTTGTTAAACAGAATCTTACCTCTCATGTGGGCCCCATCAGCCTTGCAATGTTTCTTAGTGCTCATTACGCAGGAGAGGATATAGTTCTTAAACTCCAGCCCAATGAGCCATGGAAAAAAGTTTTTGGGCCAACTTTTGTTTATCTTAATACCTTGTTGGATCATGAAGACCCACTAGACCTTTGGGAGGATGCCAAATATAAGATGTACGAGGAAGTTCAAAGTTGGCCCTATGATTTTCCAGCTTCACATGATTTTCAAAAGTCTAGCCAACGGGGTAGCGTTTGTGGTACATTACTAGTTCGTGACAGGTATATAAGTGACGAGTACATAATAGCACAAGATGCATACATAGGATTGGCACCACCAGGAGATGCTGGATCTTGGCAAATAGAATGCAAGGGATACCAATTTTGGACTAGAGCAAATGAGGAAGGCTACTTTTCAATCAAGAATATACAAAGTGGGGATTACAATCTATATGCATGGGTTCCTGGTTTCATTGGAGAATATTGGAACAATGTTGTCCTCAAAATAACCTCAGGTTGTGAAATAAATGTTGGTGACATAATTTATGAGCCCCCAAGAGATGGTCCAACATTATGGGAGATTGGTATTCCTGATCGTTCAGCTGCTGAATTTTATGTTCCTGATCCTAATCCAAAATACATAAACAAGCTATATATAGATCATCCAGACAAGTTTAGACAGTATGGTTTGTGGGAAAGATATGCAGAGCTATATCCAAATGAAGATTTGATTTACACTATTGGTGTTAGTGAGTATAGAAAAGATTGGTTCTATGCACAAGTCACCAGGAAGAAAAATGATGGCAGTTACCAAGGAACTACATGGCAAATTAAGTTCAACTTGCATGATGTGGATGCAAGTGGAATTTATAAATTACGATTGGCTCTTGCAAATGCAAATGTCTCTGAGTTACAGGTAAGAGTGAATGATCTAAAACAATTAGATCCTCCACTATTTACTACTGGGGTGATTGGGAAGGACAATGCAATTGCTAGACATGGAATTCATGGACTCTATTGGCTATTCAACATTGATGTGCCAAGTCTTCTTCTATCCAAAGGTGATAATACTATATTTCTAACACAAAATATGGCTATTGGCCCTTTGGCCCTCTTCCAAGGAATAATGTATGATTATATTCGTTTAGAAGGCCCTGGCCCTTTTTCTTCCCATTAA 1947 0.3914 MSSQAVQLHIKDNHVVMDNGVVQVYLSNPGGFVTRIQYNGIDNLLEALNEKNNRGYWDVVWSEAGSTGTTGTFERIVGTSFNVIVETEEQVEVSFTRIWDSSLKGKQSPLNIDKRYVMLCNSSGFYSYAIFEHLKEWPAFNIPQIRIVYKLRKDKFHYMAVGDNRQRLMPLPDDRLPGRGEELVPPEAVLLVNPVEPQFKGEVDDKYQYSCENKDLKVHGWISQESETNPAMGFWVIIPSNEFRSGGLVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTLLDHEDPLDLWEDAKYKMYEEVQSWPYDFPASHDFQKSSQRGSVCGTLLVRDRYISDEYIIAQDAYIGLAPPGDAGSWQIECKGYQFWTRANEEGYFSIKNIQSGDYNLYAWVPGFIGEYWNNVVLKITSGCEINVGDIIYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYIDHPDKFRQYGLWERYAELYPNEDLIYTIGVSEYRKDWFYAQVTRKKNDGSYQGTTWQIKFNLHDVDASGIYKLRLALANANVSELQVRVNDLKQLDPPLFTTGVIGKDNAIARHGIHGLYWLFNIDVPSLLLSKGDNTIFLTQNMAIGPLALFQGIMYDYIRLEGPGPFSSH 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01214 648 Pfam Rhamnogalacturonate lyase family 5 203 IPR010325 -
Car02g01214 648 Gene3D - 335 433 - -
Car02g01214 648 Pfam Polysaccharide lyase family 4, domain III 447 639 IPR029411 -
Car02g01214 648 SUPERFAMILY Galactose-binding domain-like 444 640 IPR008979 -
Car02g01214 648 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 646 - -
Car02g01214 648 Pfam Polysaccharide lyase family 4, domain II 362 433 IPR029413 -
Car02g01214 648 Gene3D - 445 640 - -
Car02g01214 648 CDD RGL4_N 12 298 - -
Car02g01214 648 SUPERFAMILY Starch-binding domain-like 375 425 IPR013784 GO:0030246
Car02g01214 648 Gene3D - 5 278 IPR014718 GO:0030246
Car02g01214 648 PANTHER LG27/30-LIKE GENE 1 646 - -
Car02g01214 648 CDD RGL4_C 449 640 - -
Car02g01214 648 CDD RGL4_M 338 437 IPR029413 -
Car02g01214 648 Coils Coil 551 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01214 Car-Chr2 36722685 36736100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01214 1 642 Polysaccharide Lyase AT1G09890 65.008 0.0 870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01214 K18195 - gmx:100815677 1167.91