Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01208 ATGGAACCATCAATTTACGGTCACTCTCACCCCTTGAACATCACCGCTGAAAGTGACGACGGTTCCGGTCCCGACAACACCATCGAAGGTCACCACCACATTCAGTACGAAACGCACGGTCTAAATGATGGCGGCGTCGGCGGCGGTGTTGTTGTTGATGAAGGCACCTCCGACGCCGTGTATGGTCACGGCGGTGGAAACTCTGAATTAGCTCTTCAAAGCTTTGATGATTCTAGTCAACTTACGCTTTCGTTTCGTGGTCAAGTTTATGTCTTTGATTCTGTTACTCCTGATAAGGTTCAATCGGTGTTGTTACTGTTGGGTGGATGTGAATTACCTCAAGCTGGTACGACATGTGTGGATGCGGTGCCTCAACAAAGTCAGAGGGGTTCAACGGAATTTCCTACAAAATGTAGTCTACCACAGCGAGCAGCCTCATTAATTAGGTTCCGGCAGAAGAGGAAAGAAAGATGCTTTGAAAAGAAAGTTAGATATGGTGTACGTCAAGAAGTTGCACTCAGGATGCACCGAAACAAGGGTCAATTTACTTCATCTAAGAAACAGGATGGAGCAAATAGTTGTGGTACAGACCAGGATTCTGGGCAGGACGACAGTCAATCAGTTACCTTTTGCACACATTGTGGTATAAGCTCTAAATCGACCCCAATGATGCGGCGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTCTGGGCAAATAGGGGTGCTTTGAGAGACCTTTCTAAGAGACATCCGGAACTATCTATTGTACCAGCTGAGCATGTTGATCAAGGTAATGGCTCCGATTGTGGGACAGCAATTATCCCTGCACATAACAATCTTGCTGCTTTCTCTGAGAATGATAACCAAGCTTTGGTAGCTGATCGTTGA 903 0.4673 MEPSIYGHSHPLNITAESDDGSGPDNTIEGHHHIQYETHGLNDGGVGGGVVVDEGTSDAVYGHGGGNSELALQSFDDSSQLTLSFRGQVYVFDSVTPDKVQSVLLLLGGCELPQAGTTCVDAVPQQSQRGSTEFPTKCSLPQRAASLIRFRQKRKERCFEKKVRYGVRQEVALRMHRNKGQFTSSKKQDGANSCGTDQDSGQDDSQSVTFCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRHPELSIVPAEHVDQGNGSDCGTAIIPAHNNLAAFSENDNQALVADR 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01208 300 MobiDBLite consensus disorder prediction 1 30 - -
Car02g01208 300 SMART tify_2 74 109 IPR010399 -
Car02g01208 300 ProSiteProfiles Tify domain profile. 74 109 IPR010399 -
Car02g01208 300 PANTHER GATA TRANSCRIPTION FACTOR 25 22 278 - -
Car02g01208 300 ProSitePatterns GATA-type zinc finger domain. 211 238 IPR000679 GO:0006355|GO:0043565
Car02g01208 300 MobiDBLite consensus disorder prediction 184 206 - -
Car02g01208 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 209 262 - -
Car02g01208 300 Pfam CCT motif 143 185 IPR010402 GO:0005515
Car02g01208 300 ProSiteProfiles GATA-type zinc finger domain profile. 211 264 IPR000679 GO:0006355|GO:0043565
Car02g01208 300 Pfam tify domain 78 108 IPR010399 -
Car02g01208 300 Pfam GATA zinc finger 211 246 IPR000679 GO:0006355|GO:0043565
Car02g01208 300 ProSiteProfiles CCT domain profile. 143 185 IPR010402 GO:0005515
Car02g01208 300 CDD ZnF_GATA 210 254 IPR000679 GO:0006355|GO:0043565
Car02g01208 300 MobiDBLite consensus disorder prediction 176 206 - -
Car02g01208 300 Gene3D - 201 259 IPR013088 GO:0006355|GO:0008270
Car02g01208 300 SMART GATA_3 205 258 IPR000679 GO:0006355|GO:0043565
Car02g01208 300 PANTHER GATA TRANSCRIPTION FACTOR 28 22 278 IPR045280 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01208 Car-Chr2 36537065 36541903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01208 78 299 Tify Gene Family AT4G24470 55.932 3.04e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car02g01208 CCT 2.9e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01208 - - pvu:PHAVU_008G182900g 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01208 02 36537065 36541903 Car05g02679 05 71828852 71833883 PCT