Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01199 ATGGGTGGTGCACCTTCTCTCAACCCATTCAGTTTCACATTTTTCCCTTTCTTCCCCATCGTCGTTGTCACCGTCACCACCACGCTAATTCTAATTGCAAGTGCTGATCAAGATCACGACTCAAAAGAAAATGGAGGAATCCCCGCTCTCGAAGACGACAATGGCGCCGCTACATCGTCACCGCCGCCACTATCATCGACTACAAGTCACAAGCAAAAGAAATTTGCTTCCAAACCTAGTACGGCAGTAATAATAGGCATTTTAACGACAATAGTTTCCATCACATTGCTCATACTTCTCTATATCAAACACTGCTCCAAAGGAAATGTAAATATGTTTAATAATAATGCTACCGACGCAAATCCCAACGCGGAAACAAATTTGCAAGATAGGAAGAACTCCGGAATCGAGCGTACAGTTGTGGAAGCGTTGCCGGCTTTCAAATTTGGTTCATTGAGAGGCCAAAAAAACGGACTCGAATGCGCAGTTTGTCTCAACGGATTTGAGGATCCTGAGGTACTCAGGTTATTACCAAAATGCAACCACGCTTTCCACGTGGAATGTGTCGACATGTGGTTAGGCGAACATTCCACGTGTCCACTTTGTCGATATAAGGTAGACCCTGACGACGTTATTATTCCTCCGCGAAGAATCACAGAGGAAGAATCATCGTCGTCAAATGTTGAAAGTGGGAGAGTTACTAATAATACAAATATTCCCGAGAATAGTGAAACGTCGTCGAAGTTATCTTGGGATAGGGATAGTAATAGTAATAATATTAATTTAAGAGATATAAGGAGTGATGGTGGTATGGGAGAGCATAAGTTGGAGCACCGTATAATTGTGTCCCCAACTTCATGTAGTGGGGTCCAGCAACGATGGAGTAATATTGAGAGATGTGATATGCTTTACTTAACCTCAGATGGAATCATAAGTGAAAATTTGTCTTCAGCAATGAATAATAGAGACAGAGGAAAGAGAAGAATGGTGGAGCATAATCGAGATATTATTGATGACGAGATGGAGAATGGTTTAGGTGGTGGTAAGAGGTATTTAAGAAGTGTATCAGAGATGACAGGGATTAGGAGATTTATGAGTAGTGATAGAGAACGTCGTGGTGGTCGAGAAGAACAAGAGAGACAAAGGGAGGGAGCAGTTTTAAGGTGGTTGAATTGGATTTCCAAGTCAAAATCACCAAGAGTTACTTCATAG 1212 0.42 MGGAPSLNPFSFTFFPFFPIVVVTVTTTLILIASADQDHDSKENGGIPALEDDNGAATSSPPPLSSTTSHKQKKFASKPSTAVIIGILTTIVSITLLILLYIKHCSKGNVNMFNNNATDANPNAETNLQDRKNSGIERTVVEALPAFKFGSLRGQKNGLECAVCLNGFEDPEVLRLLPKCNHAFHVECVDMWLGEHSTCPLCRYKVDPDDVIIPPRRITEEESSSSNVESGRVTNNTNIPENSETSSKLSWDRDSNSNNINLRDIRSDGGMGEHKLEHRIIVSPTSCSGVQQRWSNIERCDMLYLTSDGIISENLSSAMNNRDRGKRRMVEHNRDIIDDEMENGLGGGKRYLRSVSEMTGIRRFMSSDRERRGGREEQERQREGAVLRWLNWISKSKSPRVTS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01199 403 MobiDBLite consensus disorder prediction 58 73 - -
Car02g01199 403 MobiDBLite consensus disorder prediction 215 253 - -
Car02g01199 403 PANTHER RING-H2 FINGER PROTEIN ATL43 57 250 - -
Car02g01199 403 PANTHER RING-H2 FINGER PROTEIN ATL43 273 398 - -
Car02g01199 403 Pfam Ring finger domain 160 203 IPR001841 -
Car02g01199 403 SUPERFAMILY RING/U-box 144 215 - -
Car02g01199 403 MobiDBLite consensus disorder prediction 219 253 - -
Car02g01199 403 CDD RING-H2_EL5_like 160 203 - -
Car02g01199 403 ProSiteProfiles Zinc finger RING-type profile. 161 203 IPR001841 -
Car02g01199 403 SMART ring_2 161 202 IPR001841 -
Car02g01199 403 MobiDBLite consensus disorder prediction 38 73 - -
Car02g01199 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 210 IPR013083 -
Car02g01199 403 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 57 250 - -
Car02g01199 403 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 273 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01199 Car-Chr2 36335374 36337056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01199 79 402 C3H Transcription Factor Family AT5G05810 36.554 5.27e-58 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01199 K19041 - cam:101490448 728.398