Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01198 ATGGACAACCGTATAGGATCCCAAATTTATAGGGGCAACAATGTATACTTTACAGGAAACAAAATATCCGTACAAAAGACTGAAGATATTTATTTTTGCATCAAAGAAGGAAAGTTAGATTCTTTTATTAGCTATATTTGGGTACAAGTCCCTCCTTTCCTTTCTTGTAAATTCAGCCACACCATTCTAATCACTAATCAGAGAAAGAAAGAAATGGCGAGGCAGAAAATAAAGATAAAGAAAATAGACAACGCAACAGCGAGACAAGTAACATTTTCAAAGAGAAGAAGAGGAATCTTCAAGAAAGCTGAGGAGCTTTCAGTGTTGTGTGATGCTGAAGTTGGTCTCATCATTTTTTCAGCTACTGGAAAACTCTATGAATATGGCAGCTCCAATATGAAGGATATAATTACAAGGTATAATCAGCACTTCCAACACATGAGCAAATCAAACAAACCTCTCCAGGAATTTCAGGGAGAGAATTTATCAGCTGAATTGCAAAAGGAAGTTGCTGATAAAACCCAACAACTAAGGGGGATGAAGGGTGAGGATTTTGAAGGAATAAACTTAAAGGGGTTGCAGGAATTGGAAAAAACACTTGAAACAGGACTCAAGCGTGTGATGGAGATGAAGGAAAAGAGGATTGTCAATGAGATTAGTACACTTCAGATCAAGGGTATCAAGTTAGAAGAGCAGAACAAGCATTTAAAGCAAAAGATGGCTATGTTGTGTAATAGAAAAAATCTTATCTTGGGAGACTCAGATATCACCATGCAAGAAATTGTTTCATCAGAGTCTATGAATAATAGTGGGCTTTCTCTTGAGGATGATTCTTCAGACACTTCTCTTAAGTTGGGGTTACCCTATCCCTAA 873 0.37 MDNRIGSQIYRGNNVYFTGNKISVQKTEDIYFCIKEGKLDSFISYIWVQVPPFLSCKFSHTILITNQRKKEMARQKIKIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDAEVGLIIFSATGKLYEYGSSNMKDIITRYNQHFQHMSKSNKPLQEFQGENLSAELQKEVADKTQQLRGMKGEDFEGINLKGLQELEKTLETGLKRVMEMKEKRIVNEISTLQIKGIKLEEQNKHLKQKMAMLCNRKNLILGDSDITMQEIVSSESMNNSGLSLEDDSSDTSLKLGLPYP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01198 290 MobiDBLite consensus disorder prediction 266 290 - -
Car02g01198 290 Gene3D - 84 156 IPR036879 GO:0003677|GO:0046983
Car02g01198 290 MobiDBLite consensus disorder prediction 266 280 - -
Car02g01198 290 ProSiteProfiles K-box domain profile. 156 246 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car02g01198 290 ProSiteProfiles MADS-box domain profile. 72 132 IPR002100 GO:0003677|GO:0046983
Car02g01198 290 Coils Coil 219 239 - -
Car02g01198 290 Coils Coil 163 183 - -
Car02g01198 290 ProSitePatterns MADS-box domain signature. 74 128 IPR002100 GO:0003677|GO:0046983
Car02g01198 290 SMART madsneu2 72 131 IPR002100 GO:0003677|GO:0046983
Car02g01198 290 Pfam K-box region 163 240 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car02g01198 290 PRINTS MADS domain signature 94 109 IPR002100 GO:0003677|GO:0046983
Car02g01198 290 PRINTS MADS domain signature 74 94 IPR002100 GO:0003677|GO:0046983
Car02g01198 290 PRINTS MADS domain signature 109 130 IPR002100 GO:0003677|GO:0046983
Car02g01198 290 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 72 285 - -
Car02g01198 290 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 81 128 IPR002100 GO:0003677|GO:0046983
Car02g01198 290 PANTHER SERUM RESPONSE FACTOR HOMOLOG 72 285 - -
Car02g01198 290 Coils Coil 193 213 - -
Car02g01198 290 CDD MADS_MEF2_like 73 143 IPR033896 GO:0000977|GO:0045944
Car02g01198 290 SUPERFAMILY SRF-like 74 146 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01198 Car-Chr2 36284155 36295735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01198 72 289 MADS-box Gene Family AT2G22540 51.261 7.45e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car02g01198 K-box 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01198 - - cit:102621460 251.521