Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01196 ATGCTTCCTTTTCGGAGATTCTATGGGCTCGAGAGTTGGCTAGATAAAGACTCAGAGAAAATCAACGGTGAGAGATCAAAATCCGAGAGAAAATCGACGGAAGCATGCAAGAGTCACAGGGAAGCTGAAAGGAGACGTAGACAGCGAATCAACGCCCATCTCTCCACTCTACGCTCTCTCCTCCCTAACACCATCAAGTCAGATAAGGCGTCATTGCTAGCCGAAGTGGTACAACACGTGAAACGGTTAAAGAAGGAAGCCGGTGACGTGGCGAACCGGTATAATGACATAGAGTCATCATCTTCGTGTAGCGGAGAACCCGGTTCAGTAAATTCTTTGGAGAGAGCTGAGGCGTGGCCATTTCCGGGGGAATCGGATGAGGCGACGGTGAGTTATTACAGCGGGGAGGAAGGGGAACCTCGGAGGATGAAAGCGACGGTTTGTTGTGAGGACCGGCCCGGTCTGAACCGGGATCTAATACAGGCAATCCGGTCGGTTCGGGCGAAAGCGGTTCGAGCGGAGATGATGACGGTTGGGGGTAGGACGAAGAGTGTTGTGGTGGTACAGTGGGCTAAGAGTGATGCAATAGGGGAAGAAGTTGGAATGTTGGAAAGGGGTTTGAAGGCTGTGATAGAAGATCGGGCTTTTTTGGGCTCTGGGATGGGTCCAATATTTTTGGGCCATAAACGGGTTCGAGATAGTACTGAGGTTGACTGTTCTTTATTGTTGAAGAACGAGGATTTCTACTAA 750 0.5027 MLPFRRFYGLESWLDKDSEKINGERSKSERKSTEACKSHREAERRRRQRINAHLSTLRSLLPNTIKSDKASLLAEVVQHVKRLKKEAGDVANRYNDIESSSSCSGEPGSVNSLERAEAWPFPGESDEATVSYYSGEEGEPRRMKATVCCEDRPGLNRDLIQAIRSVRAKAVRAEMMTVGGRTKSVVVVQWAKSDAIGEEVGMLERGLKAVIEDRAFLGSGMGPIFLGHKRVRDSTEVDCSLLLKNEDFY 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01196 249 PANTHER TRANSCRIPTION FACTOR BHLH30 18 235 IPR045847 GO:0003700|GO:0006355
Car02g01196 249 Pfam Helix-loop-helix DNA-binding domain 36 83 IPR011598 GO:0046983
Car02g01196 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 34 83 IPR011598 GO:0046983
Car02g01196 249 SMART finulus 40 89 IPR011598 GO:0046983
Car02g01196 249 PANTHER OS09G0463900 PROTEIN 18 235 - -
Car02g01196 249 Gene3D - 27 91 IPR036638 GO:0046983
Car02g01196 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 37 91 IPR036638 GO:0046983
Car02g01196 249 MobiDBLite consensus disorder prediction 20 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01196 Car-Chr2 36182902 36184419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01196 8 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 41.706 6.20e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car02g01196 HLH 9.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01196 - - gmx:100816394 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01196 02 36182902 36184419 Car02g01196 02 36182902 36184419 ECH