Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01174 ATGGAATTTGACGAGCAAGAGGAACAAGAAGAAGAAATGGAGATTCCAGAGGCATCAACTCCGGTGCCGGCGAGTTATGACTCACTCGGAAACTCAGCCTCAAGGTCAAAATTCGCCGTCGGAGCTGATGGACGGAAAATCAGCGGTGGTGGCGGTGGTTTCGCTTCAACGGTGAAGTACCGAGAATGTCAGAAGAATCACGCCGTTAGCTTCGGGGGCCACGCCGTTGACGGTTGTTGCGAGTTCATAGCCGCCGGAGAAGAAGGAACACTTGAAGCAGTGATTTGCGCGGCTTGTAATTGTCACCGGAACTTTCACCGGAAGGAGATCGACGGCGAGACAGTTAGTTCATGTCAGCGTTcacaaccaccacctccgccgccacaataccaccactacaaccaattctcaccttactaccaccgtacttcgccttccaccgccggttacctccaccaccaccTTGCAACTCCTCCGATTTCGCACCACAGACCATTGGCTCTCCCTGCCGCCGCCTCTGGAGGCGGATTCAGCGGAGAAGAAGATGATATGTCAAACCCTAGTAGTAGCGGCGGTGGCGGTGGAGGATCAAAGAAAAGATTCAGAACAAAATTCACACAGGAACAGAAAGAGAAGATGTTAGCATTTGCAGAACAACACGGTTGGAGAATTCAGAAACATGATGAGGCTGATGTTGAACAGTTTTGTGCTGAAAATTGTGTGAAGAGAAATGTTCTCAAAGTTTGGATGCACAATAACAAGAACACTCTTGGTTAG 777 0.4273 MEFDEQEEQEEEMEIPEASTPVPASYDSLGNSASRSKFAVGADGRKISGGGGGFASTVKYRECQKNHAVSFGGHAVDGCCEFIAAGEEGTLEAVICAACNCHRNFHRKEIDGETVSSCQRSQPPPPPPQYHHYNQFSPYYHRTSPSTAGYLHHHLATPPISHHRPLALPAAASGGGFSGEEDDMSNPSSSGGGGGGSKKRFRTKFTQEQKEKMLAFAEQHGWRIQKHDEADVEQFCAENCVKRNVLKVWMHNNKNTLG 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01174 258 Gene3D - 183 257 - -
Car02g01174 258 SUPERFAMILY Homeodomain-like 184 256 IPR009057 -
Car02g01174 258 MobiDBLite consensus disorder prediction 1 30 - -
Car02g01174 258 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 59 110 IPR006456 -
Car02g01174 258 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 56 257 - -
Car02g01174 258 MobiDBLite consensus disorder prediction 115 138 - -
Car02g01174 258 MobiDBLite consensus disorder prediction 1 15 - -
Car02g01174 258 MobiDBLite consensus disorder prediction 161 200 - -
Car02g01174 258 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 56 257 - -
Car02g01174 258 Pfam ZF-HD protein dimerisation region 58 110 IPR006456 -
Car02g01174 258 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 198 255 IPR006455 -
Car02g01174 258 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 60 109 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01174 Car-Chr2 35202106 35205038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01174 7 257 ZF-HD Transcription Factor Family AT4G24660 49.020 8.21e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Car02g01174 ZF-HD_dimer 8.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01174 - - gmx:100776421 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01174 02 35202106 35205038 Car02g01174 02 35202106 35205038 ECH
Car02g01174 02 35202106 35205038 Car05g02708 05 72171104 72172419 PCT