Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01158 ATGCAAGGGTATGATTTATATATTAAGATAAATATTTATAATCAAATGATCAGAATGCAAAACAATAGTCCATTTACAACAGTATGGAGTTTCAGTATTCATGGCCAAACATGGGTCACTTTGTTTCTTATTATTATTACTCTCATACAAATCTCACAACCGGTAATTGTTACCGGTCAGCCCCTAACACCAGAAGTAAATCCAGCAGAGAACAACAAATCAGTAGCCACTATAATGGGAGTAGTAATTCTTATGTTTCTCTTTTCCGGTTTCCTTTCTCTCTACTCAGCCAAATGCACCGAACGTCGACACGGAGTCATATTCGATCTCACTTTACCGACCGATGGAAGCGGCCGCCCGTCACAAAACAACCAGCCTAGCAACGGTCTTAATCAAGAAGTTATTGATACATTCCCTACTTTTCTTTACTCCAACGTGAAGGGACTCAAGATTGGGAAAAGCACGTTGGCTTGTGCTGTTTGCTTGAACGAGTTTCAAGACGATGAAACGCTGCGTTTAATCCCTAAATGTAGCCACGTTTATCACCATACTTGTATTGATATTTGGCTTGTTTCACATAACACTTGTCCCGTTTGTCGTGCTAATCTTGTTCCAAGACCCGACGACAATACCGTGCCAGTAACCATTCAAATAGACGAAGAACATCATCCACATGAGTTGAATATTATTAGTTCAACAAACGAGGAAGATATAGAACTTGTTGAAGAGGAACCAAAGGGAGACAACATTAGCATGGAATATTCACCAAAGATAGAGTTGCTTCGTAGGTCTCGCACATATGGTGCACCAACACGGTCAAAATCGACAGGGTTCTTATCAGCACTATTGTTTTCACGGTCGAATTCAACAGGTATGTTGGTGCAACCAGGTGAGGATTGTGAGAGGTTTACACTGAGGTTACCTGATGATGTTCGGAATCAGATGATGAAGAAAACGACCACACTTAAGCGTGCGAGTAGTTGTGTTAGTTTTACAAGAATGAGCAGTGGCACGTGCGGTTATAGGACGAGAAGTGTGGGTTCTGGAAGCGGGAGAGGTCTCGTGGAATACGAGAGGTTTGGAAGTGAGGAAGAGGAGCAATTAGGGGTCTTTAGAAACAGTTGCACTACTAAAATGGTGAGAAAATATCCGGTGAGGTATTTGGGAGTTGATATGGATAATAATGGTGGCGAAAGATCGAGTGATCTTTTGTGTCCTAAGTAG 1224 0.4158 MQGYDLYIKINIYNQMIRMQNNSPFTTVWSFSIHGQTWVTLFLIIITLIQISQPVIVTGQPLTPEVNPAENNKSVATIMGVVILMFLFSGFLSLYSAKCTERRHGVIFDLTLPTDGSGRPSQNNQPSNGLNQEVIDTFPTFLYSNVKGLKIGKSTLACAVCLNEFQDDETLRLIPKCSHVYHHTCIDIWLVSHNTCPVCRANLVPRPDDNTVPVTIQIDEEHHPHELNIISSTNEEDIELVEEEPKGDNISMEYSPKIELLRRSRTYGAPTRSKSTGFLSALLFSRSNSTGMLVQPGEDCERFTLRLPDDVRNQMMKKTTTLKRASSCVSFTRMSSGTCGYRTRSVGSGSGRGLVEYERFGSEEEEQLGVFRNSCTTKMVRKYPVRYLGVDMDNNGGERSSDLLCPK 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01158 407 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 18 348 - -
Car02g01158 407 Pfam Ring finger domain 157 200 IPR001841 -
Car02g01158 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 205 IPR013083 -
Car02g01158 407 SUPERFAMILY RING/U-box 152 209 - -
Car02g01158 407 SMART ring_2 158 199 IPR001841 -
Car02g01158 407 CDD RING-H2_EL5_like 158 200 - -
Car02g01158 407 ProSiteProfiles Zinc finger RING-type profile. 158 200 IPR001841 -
Car02g01158 407 PANTHER RING FINGER DOMAIN-CONTAINING 18 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01158 Car-Chr2 34477459 34479315 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01158 41 340 Rapid Response to Elicitors AT3G05200 38.689 7.45e-51 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01158 K10664 - gmx:100814384 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01158 02 34477459 34479315 Car02g01158 02 34477459 34479315 ECH