Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01157 ATGAGGAGCCACAGAAAGCTTTTCCCAACAGAAACTACCACAAATCAAACCTTAGATTGTTATGGCTTTTGTGACCCTTCATGTCCTTCAAATTGTTACACTAACACAAATTACTATTTCACACCACCACCACAAGAACACACAACACAAGTTAACCACTTTTCCTCCTACTTCATAATCCTCATTTCATTATTCTCATTGATTTTCGTCATCATTGGTTTCTATGTGATCAAAATGAAATGCTATAACGACATGTGCGGTTTGAGAATCAATAACTCGGTTCGAGAGCGAACCGATAACTCCCAAGAGTTTCTCAACGAAAACGAAGCAAATCACGATCACCCCGTGTGGCTGATCGCTACCGCTGGTTTGCAACAGTCGATAATAAATTCAATTACAGTTTGCAAGTTTAGAAAAAATGAAGGGTTAATTGAAGGAACAGAGTGTTCTGTTTGTTTGAATGAGTTTCATGAAGATGAAATTTTAAGACTATTGCCAAAGTGTAGTCATGCTTTTCACATTTCTTGTATTGATACATGGTTGAGATCTCATACTAATTGTCCTCTTTGTAGAGCTTCTATTGTTTCCAACAATGTAACTTCTGAAGTAACCATGTCAAATTTGGAGCAAGAAAATAACAACTTGGGAAGAAATCAAGAGACCCAGATGGAGAATCCAAGGAATGAAGATGTGTTAAGCAACAATATTGTAATCAATGTGGAATTGGAAAACAGGGTGGAAACAACAGGGGAATCAAGTGATGAATCAAATTGCAAGGAACAAATACTTAATGATCCAACGGTCATAAATGATATATGTTATGTTTCAAGTAATTCTAGATTTGGTGGTGGAGGTTGTGTTGGTATGGAAAGTAGAAACCATGATCAAGTTATTGATCTTATAGGGGAATATGAGAAAGAGGTGCACAAGGTTAATCTTTGGAAGCTTGTTACTCAAACGAATAGTAAAACAATGCGTCCTTCCTCAATTGAAGAGCGTTTGCATGTAAGGCCTGTAGCTATGAAAAGGTCACTCCCTTTGAAAGGAAGGAAAGGTTTTAAAAGATGTTTGCAACCGCGATCGGTGCCGCAACATCATTGTTTTTAA 1107 0.3722 MRSHRKLFPTETTTNQTLDCYGFCDPSCPSNCYTNTNYYFTPPPQEHTTQVNHFSSYFIILISLFSLIFVIIGFYVIKMKCYNDMCGLRINNSVRERTDNSQEFLNENEANHDHPVWLIATAGLQQSIINSITVCKFRKNEGLIEGTECSVCLNEFHEDEILRLLPKCSHAFHISCIDTWLRSHTNCPLCRASIVSNNVTSEVTMSNLEQENNNLGRNQETQMENPRNEDVLSNNIVINVELENRVETTGESSDESNCKEQILNDPTVINDICYVSSNSRFGGGGCVGMESRNHDQVIDLIGEYEKEVHKVNLWKLVTQTNSKTMRPSSIEERLHVRPVAMKRSLPLKGRKGFKRCLQPRSVPQHHCF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01157 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 201 IPR013083 -
Car02g01157 368 CDD RING-H2_EL5_like 148 191 - -
Car02g01157 368 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 357 IPR044675 -
Car02g01157 368 Coils Coil 205 225 - -
Car02g01157 368 SMART FANCL_C_2 145 198 - -
Car02g01157 368 SMART ring_2 149 190 IPR001841 -
Car02g01157 368 Pfam Ring finger domain 148 191 IPR001841 -
Car02g01157 368 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 357 - -
Car02g01157 368 MobiDBLite consensus disorder prediction 209 228 - -
Car02g01157 368 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Car02g01157 368 SUPERFAMILY RING/U-box 140 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01157 Car-Chr2 34414163 34415634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01157 2 262 C3H Transcription Factor Family AT1G72220 40.411 2.64e-60 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01157 - - mtr:MTR_5g064890 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01157 02 34414163 34415634 Car02g01157 02 34414163 34415634 ECH