Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01129 ATGAATTCGAGTACAAATGATCTTCAACCTCTACCTTTGCTTAGTAGTTTCCTTGGTTCAACTTCACAAGAACCTTTACATCAAAATGAAAATCATAAATCATGCTATAATAATCAAGCTGAGGATGTAACAGTGGCCTTACACATAGGTCTCCCTGACAATTCAATTGAATCACCAATTGATAATGGATTTGTGAATGTCCCAACTCAAGTTCCTAATAATTACTGGATTCCAACTCATGAACAGATTCTCATTGGATTCAGTCATTTCTCTTGTCCTGTTTGCCTCAAAACTTTCAATCGTTACAACAATCTTCAGATGCATATGTGGGGACACGGTTCACAATATCGAAGAGGACCAGACTCATTGAAACGAACACATCCGCGGCCATTGTTAGACATTCCATGCTATTGTTGTTCAAAGGGATGTAAGAACAACATTGAGCATCCAAGAGCAAAGCCATTGAAGGATTTCAGAACATTGCAAACACACTACAAGAGAAAGCATGGTTCAAAGCCTTTTACTTGTCGCAAGTGTGGGAAACCTTTGGCAGTAAAAGGTGATTGGAGAACTCATGAGAAAAACTGTGGCAAGCGTTGGCTTTGTATTTGTGGTTCAGATTTCAAACACAAGAGGTCACTTAAGGATCATATCAAAGCATTTGGATTTGGACATAGTCCTTTTTCTTCTTCCTCGGATGGTATTTAA 708 0.3856 MNSSTNDLQPLPLLSSFLGSTSQEPLHQNENHKSCYNNQAEDVTVALHIGLPDNSIESPIDNGFVNVPTQVPNNYWIPTHEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCSKGCKNNIEHPRAKPLKDFRTLQTHYKRKHGSKPFTCRKCGKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHSPFSSSSDGI 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01129 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Car02g01129 235 SUPERFAMILY beta-beta-alpha zinc fingers 159 194 IPR036236 -
Car02g01129 235 Pfam Zinc finger, C2H2 type 90 109 IPR013087 -
Car02g01129 235 Gene3D Classic Zinc Finger 89 112 - -
Car02g01129 235 SUPERFAMILY beta-beta-alpha zinc fingers 77 112 IPR036236 -
Car02g01129 235 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Car02g01129 235 PANTHER PROTEIN TRANSPARENT TESTA 1-LIKE 6 234 - -
Car02g01129 235 SMART c2h2final6 137 169 IPR013087 -
Car02g01129 235 SMART c2h2final6 174 194 IPR013087 -
Car02g01129 235 SMART c2h2final6 90 112 IPR013087 -
Car02g01129 235 PANTHER ZINC FINGER PROTEIN WIP2 6 234 IPR043584 GO:0003700|GO:0010468
Car02g01129 235 Gene3D Classic Zinc Finger 170 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01129 Car-Chr2 32468609 32470267 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01129 43 231 C2H2 Transcription Factor Family AT1G34790 66.667 1.01e-97 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car02g01129 zf-C2H2 0.0035 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01129 - - cam:101514022 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01129 02 32468609 32470267 Car02g01129 02 32468609 32470267 ECH