Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01128 ATGGCTTACCCACATTACCGATCACAGTTCGGAGACACAACGTTCACTAAGGTTTTTGTTGGAGGACTAGCTTGGGAAACACCAACTGAAGAAATGAGGAGTTATTTTGAACAATTTGGTGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACGGCAAAATCTAAAGGATACGGATTTGTAACGTTTCGTGATCCAGAATCAGCTAGAAGGGCTTGTGCTGATCCAAACCCAGTAATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTAGGACGTCCAAGACCATCACCACCAAGAGGGAGGGGAACATATCAAAGTGGAGTGGGGACTGGAGCACCGGGAGCGGCCGCAGCATACGGCGGTGTTCCAGTGGGAGGGCCACCACAAATGGCAGCAGCAACGGGAGGTCCAGTAATGTACCAACCATATGGCTACCCTACCTACACTCCTGAATATGGGTACCATCAAGCTACAATCTATAACCCACAGATTCAACAAGCACAATATTTTCAACAATTATATGGACCATCATCTTCAACTATGGGATCACCATATTACTATGGCTATTCTGTGCAAGCAGCAGCACCAAGGGGTACATTTTCTACACCCCGCATACAAGCTGCACCGTCCTATCTATACTACCCTACAACACCAATGGAAGGTTCTTTCTCTGCTGCATATCGTCCATTTCAACAACCACTTATAAGGCACCCCTCTCCTTCCCCTTCTCCTACTGATTCACAGACTCAGCAACGAACCTCAGCAGAGACAACAGCTGGAGTAATAACTTCAGAAAGTTCAAATACCCAAGGGAAGAACAACTAA 834 0.4556 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTYQSGVGTGAPGAAAAYGGVPVGGPPQMAAATGGPVMYQPYGYPTYTPEYGYHQATIYNPQIQQAQYFQQLYGPSSSTMGSPYYYGYSVQAAAPRGTFSTPRIQAAPSYLYYPTTPMEGSFSAAYRPFQQPLIRHPSPSPSPTDSQTQQRTSAETTAGVITSESSNTQGKNN 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01128 277 Gene3D - 3 112 IPR012677 -
Car02g01128 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Car02g01128 277 SMART rrm1_1 17 89 IPR000504 GO:0003723
Car02g01128 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Car02g01128 277 PANTHER GEO13361P1-RELATED 1 268 - -
Car02g01128 277 SUPERFAMILY RNA-binding domain, RBD 9 114 IPR035979 GO:0003676
Car02g01128 277 MobiDBLite consensus disorder prediction 244 277 - -
Car02g01128 277 MobiDBLite consensus disorder prediction 234 277 - -
Car02g01128 277 CDD RRM_RBM24_RBM38_like 16 91 - -
Car02g01128 277 PANTHER - 1 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01128 Car-Chr2 32395296 32401138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01128 12 92 C2H2 Transcription Factor Family AT2G19380 38.272 2.17e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01128 K25006 - gmx:100787086 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01128 02 32395296 32401138 Car02g01128 02 32395296 32401138 ECH