Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01083 ATGGGTCGTGTTAAACTTGAGATAAAAAGAATAGAGAACACAACGAATCGACAAGTTACATTTTCGAAACGTAGAAATGGCCTCATCAAGAAAGCGTATGAATTATCAGTCCTTTGTGATATTGATATTGCCCTTATAATGTTTTCTCCTTCAAATCGTCTTAGTCACTTTTCCGGTAAAAGAAGGATAGAGGATGTTTTTACTCGTTACATTAACCTTCCTGATCAAGAAAGAGAGAATGCCGTAAGTTTTCCTGAGCTACCCTACCGCAGGAATATTCAGAACAAGGAGTTTTTGCTGAGGACGCTTCAGCAATTGAGGAGTGAAAATGACATAGCTCTTCATATGTCCAATCCGGGAGACATTAACTCAGAAATTGAGGAACTCCAACAAGAAGTTAGTAGATTACAACAACAACTTCAAATAGCAGAGGAGCAGATAAGGATGTACGAACCCGACCCATTAAAGATGACATCTATGGCAGAACTTGAAACCAGTGAAAAAAACGTAGTAGAAACCTTGGCCCGTGTAATGCAGAGAAAGGAAATTTTGTTGAACAATCATCTATCTACGTATGATCCAACTGGTATTCAGGGGATGCCGACCTCTTTCGAGAACGTAGGTTGGCTGCAGGATGGTAGTCAAAATCATTCCCATATTTTTGATGCATCCGCTCCTATGGATCCTCTCAGGGATTTATCATCTACTGTGTATGGTTCATTTTCACAAGGGACGAGTTCAAACGTTGATCCACGAGGTATAGGAGACTGCCACGTGACAAATCCAAACGATGGAAACCTTCAAGCATGGCCTCAAGGATACACATTATATCCTCCTCCTCATCATCATATTCAACATGACATGGTGAGAACTGATCATCACATCCAAGATATGATGCCACATGGACAAATCAACATGCCAATTACTGCCTCACAAGTAGAACCCCCCAAAAATGAATCAGCAGAATATGATCAATGTAAACAACCTAATCATCAGCTTCATGCTCAATGA 1011 0.4036 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSNRLSHFSGKRRIEDVFTRYINLPDQERENAVSFPELPYRRNIQNKEFLLRTLQQLRSENDIALHMSNPGDINSEIEELQQEVSRLQQQLQIAEEQIRMYEPDPLKMTSMAELETSEKNVVETLARVMQRKEILLNNHLSTYDPTGIQGMPTSFENVGWLQDGSQNHSHIFDASAPMDPLRDLSSTVYGSFSQGTSSNVDPRGIGDCHVTNPNDGNLQAWPQGYTLYPPPHHHIQHDMVRTDHHIQDMMPHGQINMPITASQVEPPKNESAEYDQCKQPNHQLHAQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01083 336 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car02g01083 336 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 275 - -
Car02g01083 336 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Car02g01083 336 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Car02g01083 336 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car02g01083 336 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car02g01083 336 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car02g01083 336 Coils Coil 126 146 - -
Car02g01083 336 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 275 - -
Car02g01083 336 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car02g01083 336 MobiDBLite consensus disorder prediction 313 336 - -
Car02g01083 336 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Car02g01083 336 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car02g01083 336 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01083 Car-Chr2 28925171 28932274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01083 1 310 Type I MADS-box Gene Family AT1G22130 57.547 2.61e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car02g01083 SRF-TF 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01083 - - gmx:100305913 535.413