Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01058 ATGGCGAATTGTCATGTTGAGAACTGGGGCGATTCTGGAATGGCAGATAATAGCCAACAAACTGATGATACTTCCACtgatattgacgttgatgttgatattgatattgataCCGATGATAAACACCAAAGCAATAGAGGAAAGAGTNNNNNNNNNNNNNNNNNAAAGAGTGGGACAAATATGGTTTCTCACTCCAAGGATCAGACCAATTTCAAAGCTGAAGATCACAAGACCCTTCGTAGACTTGCTCAAAATCGTGAAGCAGCAAGGAAGAGCAGGTTACGGAAGAAGGCATATGTACAGCAGCTGGAGAGCAGCCGAGTGAAGCTTTTGCAATTAGAGCAAGAGCTTCAACGAGCACATCAACAGGGCATATTTATTGCAACTCCTGGAGATCAAGTTCATTTGCCGGTTGGAAATGGTGCCTTAGCATTTGACATGGACTATGCCCACTGGGTTGATGAGCATCAACATTTGCTCAACGATCTACAATCAGGTTTAAATTCTCAAATGGGTGACAACGAATTGCATCTTCTCGTTGATGGTGTTATGGAACACTATAATGAATTATCTAGGTTAAAGAGCATAGGGGCAAAGGCTGATATATTTCACATGCTTTATGGACTGTGGAAGACACCAGTTGAAAGATGTTTTATATGGCTTGGTGGATTCCGTCCATCCGATCTTCTCAAGATAATCAAGAGCCACCTCGAGCCGTTAACAGATCATGAATTGATAGGAATTTGTAATCTGCAGCAGACTTCTGAGCAGTCTGAGGATGCTTTAACTCAAGGCATGGAAGCATTGCAACAATCTATTTTAGAGATGCTTTCCACTACTTCCTCTGTATCAAGTACTGGTTCTGGAAATGTAGCTGATTACATGGACCAGATGGCAATTGCAATGAGCAAGCTTGCAGTATTAGAGGAATTCCTTCATAAGGCTGACTTGTTGAAGCAAGCAACTCTGCAACAGTTGCAAAGAATTTTAACGACACGTCAGACGGCTCGGGCTCTCCTTGTCAAAAATGATTACATTTCAAGACTACGAGCACTTAGTTCGTTATGGTTAGCACGCCCTAGGGAGTAA 1089 0.4068 MANCHVENWGDSGMADNSQQTDDTSTDIDVDVDIDIDTDDKHQSNRGKSXXXXXXKSGTNMVSHSKDQTNFKAEDHKTLRRLAQNREAARKSRLRKKAYVQQLESSRVKLLQLEQELQRAHQQGIFIATPGDQVHLPVGNGALAFDMDYAHWVDEHQHLLNDLQSGLNSQMGDNELHLLVDGVMEHYNELSRLKSIGAKADIFHMLYGLWKTPVERCFIWLGGFRPSDLLKIIKSHLEPLTDHELIGICNLQQTSEQSEDALTQGMEALQQSILEMLSTTSSVSSTGSGNVADYMDQMAIAMSKLAVLEEFLHKADLLKQATLQQLQRILTTRQTARALLVKNDYISRLRALSSLWLARPRE 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01058 362 Gene3D - 76 125 - -
Car02g01058 362 Coils Coil 96 123 - -
Car02g01058 362 Pfam Seed dormancy control 160 234 IPR025422 GO:0006351|GO:0043565
Car02g01058 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 80 95 IPR004827 GO:0003700|GO:0006355
Car02g01058 362 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 4 362 - -
Car02g01058 362 PANTHER TRANSCRIPTION FACTOR TGA9 4 362 - -
Car02g01058 362 Pfam bZIP transcription factor 76 114 IPR004827 GO:0003700|GO:0006355
Car02g01058 362 CDD bZIP_HBP1b-like 77 129 - -
Car02g01058 362 SMART brlzneu 73 136 IPR004827 GO:0003700|GO:0006355
Car02g01058 362 ProSiteProfiles DOG1 domain profile. 142 359 IPR025422 GO:0006351|GO:0043565
Car02g01058 362 MobiDBLite consensus disorder prediction 1 64 - -
Car02g01058 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 75 119 IPR004827 GO:0003700|GO:0006355
Car02g01058 362 SUPERFAMILY Leucine zipper domain 77 119 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01058 Car-Chr2 25938269 25942774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01058 58 362 bZIP Transcription Factor Family AT1G68640 64.821 5.35e-139 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Car02g01058 DOG1 8.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01058 K14431 - gmx:100797393 479.174