Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01024 ATGAATTCGAATACAAATGATCTTCAACCTCTACCTTTGCTTAGTAGTTTCCTTGGTTCAACTTCACAAGAACCTTTACATCAAAATGAAAATCATAAATCATGCTATAATAATCGAGCTGAGGATGTAACAGTGGCCTTACACATAGGTCTCCCTGACAATTCAATTGAATCACCAATTGATAATGGATTTGTGAATGTCCCAACTCAAGTTCCTAATAATTACTGGATTCCAACTCATGAACAGATTCTCATTGGATTCAGTCATTTCTCTTGTCCTGTTTGCCTCAAAACTTTCAATCGTTACAACAATCTTCAAATGCATATGTGGGGACACGGTTCACAATATCGAAGAGGACCAGACTCATTGAAACGAACACATCCGCGGCCGTTGTTAGACATTCCATGCTATTGTTGTTCAAAGGGATGTAAGAACAACATTGAGCATCCAAGAGCAAAGCCATTGAAGGATTTCAGAACATTGCAAACACACTACAAGAGAAAGCATGGTTCAAAGCCTTTTACTTGTCGCAAGTGTGGGAAACCTTTGGCAGTAAAAGGATATTGGAGAACTTATGAGAAAAACTGTGGCAAGCGTTGGCTTTGTATTTGTGGTTCAGATTTCAAACACGAGAGGTCACTTAAGGATCATATCAAAGCATTTGGATTTGGACATAGTCCTTTTTCTTCTTCCTCGGATGGTATTTAA 708 0.3842 MNSNTNDLQPLPLLSSFLGSTSQEPLHQNENHKSCYNNRAEDVTVALHIGLPDNSIESPIDNGFVNVPTQVPNNYWIPTHEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCSKGCKNNIEHPRAKPLKDFRTLQTHYKRKHGSKPFTCRKCGKPLAVKGYWRTYEKNCGKRWLCICGSDFKHERSLKDHIKAFGFGHSPFSSSSDGI 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01024 235 Gene3D Classic Zinc Finger 89 112 - -
Car02g01024 235 SUPERFAMILY beta-beta-alpha zinc fingers 77 112 IPR036236 -
Car02g01024 235 PANTHER ZINC FINGER PROTEIN WIP2 6 234 IPR043584 GO:0003700|GO:0010468
Car02g01024 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Car02g01024 235 PANTHER PROTEIN TRANSPARENT TESTA 1-LIKE 6 234 - -
Car02g01024 235 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01024 Car-Chr2 21351259 21352570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01024 43 231 C2H2 Transcription Factor Family AT1G34790 65.196 4.48e-95 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car02g01024 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01024 - - cam:101491653 486.878