Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00986 ATGCCAATGAACCATGGCCACGGCCAACAATCCAGAAGGTGGTATAAACTATGCTTTGTTCCCACAAGTTCAGATAGTTCAGATGATTCTGATACAGAATCTGTAGTCATAGCTCCAAGTACTCCAACTCAAACTAGTACATGGCAACAGTCTTCTCCACCGTATTTGCCACCATCACCACCAAATCCAGAACCTCAAATCAACTGGAGTTTTCCTCCACCGCCGCCGCCACCGCCTTCTTTTTTTCTACTGTCACCACCATTAGTGCGATTACAGTTCCAGGCTACAAATCTAGAACCTCAAATCAACAGGCATTCTccaccaccaccgccgccacctccaccTTTTTCTCTACTGTCACCACCATTAGTGCGATCACAATTCCAGGCTACAAACCCAGAACCTCAAACTAACTGGCAGTCTTCACAGCAACCGCCACCGCCGTCACCACCACTGGAAAGATGGGATGAAATGTTTCCCCTTATGGATAATGTTTCCCCTTCAGTGATTGAGCAAAGACATCCCGAAGATGATCAAAGTGTGTGCCTTCGAATTCCAGACAGCGTCATCAATGCCATTCGCAGAGTGAGAATTTCAGAGTTGCATGAAAGAGATAAACTCTCTCACTGTCCCATTTGCATGGAGGAGTTTAAACTGGATGACAAAGCATGTCAGTTACCCTGCAAACATACCTACAAGTTCGAATGCATTCTTCGTTGGCTTAACAGCAACAAAACATGTCCCATTTGCAGGCTTCGGTTAGATGGTTGGGAAGGACAGGGTAGTTCTTATAACATAGGTGATGATGATGACAATAATAGTTTGGACCTTGAACCTCCAATTCTACCACCAGTAATTATAACTAATAGCTTGGAAGACCTTTTGCAATTTTCTCCACATTCACAAGTTACTGAGGATGTTGGAGGTGACAACTCTGCAGATGAAGCCGAGTATGACAGCGCATGCGACTACTTAGGTGATTCTTATGAAGATGGAGAGATAGTTAGTAGTAATTATCAAAGTAATCGTAGTTCACAAATTTAA 1044 0.4215 MPMNHGHGQQSRRWYKLCFVPTSSDSSDDSDTESVVIAPSTPTQTSTWQQSSPPYLPPSPPNPEPQINWSFPPPPPPPPSFFLLSPPLVRLQFQATNLEPQINRHSPPPPPPPPPFSLLSPPLVRSQFQATNPEPQTNWQSSQQPPPPSPPLERWDEMFPLMDNVSPSVIEQRHPEDDQSVCLRIPDSVINAIRRVRISELHERDKLSHCPICMEEFKLDDKACQLPCKHTYKFECILRWLNSNKTCPICRLRLDGWEGQGSSYNIGDDDDNNSLDLEPPILPPVIITNSLEDLLQFSPHSQVTEDVGGDNSADEAEYDSACDYLGDSYEDGEIVSSNYQSNRSSQI 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00986 347 MobiDBLite consensus disorder prediction 122 139 - -
Car02g00986 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 167 270 - -
Car02g00986 347 MobiDBLite consensus disorder prediction 100 153 - -
Car02g00986 347 ProSiteProfiles Zinc finger RING-type profile. 210 251 IPR001841 -
Car02g00986 347 CDD RING-H2_PA-TM-RING 209 251 - -
Car02g00986 347 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 167 270 - -
Car02g00986 347 SUPERFAMILY RING/U-box 189 254 - -
Car02g00986 347 Pfam Ring finger domain 209 251 IPR001841 -
Car02g00986 347 SMART ring_2 210 250 IPR001841 -
Car02g00986 347 MobiDBLite consensus disorder prediction 21 52 - -
Car02g00986 347 MobiDBLite consensus disorder prediction 21 84 - -
Car02g00986 347 MobiDBLite consensus disorder prediction 103 120 - -
Car02g00986 347 MobiDBLite consensus disorder prediction 53 84 - -
Car02g00986 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 256 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00986 Car-Chr2 18275667 18276892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00986 188 272 C3H Transcription Factor Family AT1G68180 38.889 1.80e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00986 K11982 - ccaj:109817940 189.119