Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00978 ATGGATGGAGGTAGTTGCACAGTGGACGAAAGCAGCACCACAGAATCACTTTCGATATCAATATTTCCGGCGAAGAAACCGTCAACTCCGCCACCTCCAAACAGTCTCTGCCGTGTTGGAAGTGGCGCGAGTGCAGTCGTGGATTCTGACGGAGGCGGCGTTGGAGAAGCTGAATCGCGGAAGCTTCCATCGTCTAAGTACAAAGGTGTCGTGCCACAACCAAACGGACGTTGGGGAGCGCAGATTTACGAGAAGCACCAGCGCGTATGGCTCGGAACATTTAACCAGGAAGACGAAGCTGCAAAAGCTTACGACGTCGCGGCGCAACGGTTCCGCGGCAAGGACGCCGTAACAAACTTCAAGCCTCTTTCCGGCGACGATAACAACGACGACGACATGGAGGCTGAGTTTCTCAACTCGCATTCGAAGTCGGAGATCGTCGACATGTTAAGAAAACACACTTACAATGACGAGCTTGAACAGAGCAAGCACAGCCGCGGATTCGTAGCTAGGCGACACGGCTGCGCCGGCGGTGTTACTTTTGCCGGTTTAGCAACAAGCGCGTGCGTTAAAAAGGCGCGTGAGGCTCTATTCGAGAAGGCAGTTACGCCGAGCGACGTTGGGAAACTAAACAGGTTAGTAATACCGAAACAGCACGCGGAGAAGCACTTTCCGTTACAGAAATCCGTTGATTGCGGCGTGGGAAGCGCGTCGGCAGGGAAGGGGGTGCTTTTGAATTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCTTATTGGAATAGTAGCCAAAGCTACGTTCTTACAAAAGGTTGGAGCCGGTTCGTTAAGGAGAAGAATTTGAAAGCTGGTGATACGGTTTGTTTTCACCGGTCCACTGGACCAGATAAACAGCTTTTTATTGATTGGAAAGATAGGAAAAATGTTAATGAGGTTGGGTTGTTTGTTCCGGTTGGACCGGTTGTTGAGCCGATTCAGATGGTTCGGCTTTTTGGGGTAAATATTTTGAAACTCCCTGGATCCGATGCTAATAATAATAATGGCAATGCTATTGCTGCTGTGTTCTGCAATGGAAAGAGGAGGGAAATGGAAATGTTTAATTTGGACTGTTGCAAGAAGCCTAAGATTATTGGAGCTTTGTAA 1149 0.4935 MDGGSCTVDESSTTESLSISIFPAKKPSTPPPPNSLCRVGSGASAVVDSDGGGVGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNQEDEAAKAYDVAAQRFRGKDAVTNFKPLSGDDNNDDDMEAEFLNSHSKSEIVDMLRKHTYNDELEQSKHSRGFVARRHGCAGGVTFAGLATSACVKKAREALFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQKSVDCGVGSASAGKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLFIDWKDRKNVNEVGLFVPVGPVVEPIQMVRLFGVNILKLPGSDANNNNGNAIAAVFCNGKRREMEMFNLDCCKKPKIIGAL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00978 382 CDD AP2 65 120 IPR001471 GO:0003700|GO:0006355
Car02g00978 382 Gene3D - 186 315 IPR015300 -
Car02g00978 382 Gene3D AP2/ERF domain 65 122 IPR036955 GO:0003700|GO:0006355
Car02g00978 382 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 382 IPR044800 GO:0003700
Car02g00978 382 SUPERFAMILY DNA-binding domain 65 121 IPR016177 GO:0003677
Car02g00978 382 SMART rav1_2 66 127 IPR001471 GO:0003700|GO:0006355
Car02g00978 382 MobiDBLite consensus disorder prediction 1 70 - -
Car02g00978 382 MobiDBLite consensus disorder prediction 1 23 - -
Car02g00978 382 ProSiteProfiles B3 DNA-binding domain profile. 198 309 IPR003340 GO:0003677
Car02g00978 382 ProSiteProfiles AP2/ERF domain profile. 66 121 IPR001471 GO:0003700|GO:0006355
Car02g00978 382 CDD B3_DNA 197 294 IPR003340 GO:0003677
Car02g00978 382 SUPERFAMILY DNA-binding pseudobarrel domain 197 308 IPR015300 -
Car02g00978 382 Pfam B3 DNA binding domain 198 308 IPR003340 GO:0003677
Car02g00978 382 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 382 - -
Car02g00978 382 SMART B3_2 198 309 IPR003340 GO:0003677
Car02g00978 382 Pfam AP2 domain 65 113 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00978 Car-Chr2 17586351 17588009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00978 5 382 B3 DNA Binding Superfamily AT1G25560 58.929 2.24e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Car02g00978 B3 2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00978 K09287 - gmx:100776987 548.51