Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00950 ATGTTGTTTTGCTCCAATTTTGAATCTATGCAGGCACCATCCATGCCTTCAAGTTTCAACACACTTGACTACTCCATTGATcatcatcatcaacaacaacaacaacaacaatacgaacaacTCATGAAGTATCGAATCGGCGAAGAAACATCGTGCGAAAACAACAACGGAATTGTTGATTACATGCCTCAAACAGGAGGCAGCAGCTTTTATGGTTCAAATTCTTTTGATAAATTGAGTTTCGCAGATGTTATGCAGTTTGCAGATTTCGGACCAAAATTAGCCTTAAACCGCGGAGAAGAACCCGGGATCGATCCGGTTTATTTTCTCAAGTTTCCTGTGTTGAACAACAAGATGGAAAACCAAAACACGATGTTGAATAATGAAGATTGTGGTGGTGGAGGTGAAAATAATGAAAGGTTGAAATTGGTAAACATGGAAGAAAAATCAAGAGAAGATCAACGGGAAGAAACTCGGGTTTCGGAAGAGAATAACTCGGTGCAGCAGATGCAGTTTAATGGagaacaggaagagatacaagaagagaagaattgtggagtgcaagagaacaacaagaagaggaagaGACCACGAACTGTTAAGACAAGTGAAGAAGTTGAGAGTCAACGCATGACTCATATAGCAGTTGAAAGAAATAGAAGGAAGCAAATGAATGAGCATCTTCGTGTTCTCAGATCCCTCATGCCTGGTTCATACGTGCAAAGGGGTGATCAAGCATCAATAATAGGGGGAGCTATAGAGTTCGTGAGGGAATTGGAACAACTTCTTCAATGTTTAGAATCACAAAAGAGAAGGAGACAAGTTGGAGATTCATCTCTCTCAACAACACAACAACAACCTCCATTTTTTCCTGCTACTTTGCCATTACCAAATGATCATGACATGAAGCTAGCTGAGATGGAAACACCTGGACTTCATGAAGAAACAGCTGAGAGTAAGACATGTTTGGCTGATGTGGAAGTCAAGCTTTTAGGGTTTGATGCAATGATCAAAATCCTATCAAGGAGAAGGCCTGGACAGTTGATCAAGACCATTGCTGCACTTGAAGATATGCAGTTACTTATCCTTCATACTAACATTACCACCATTGAACAAACTGTTCTTTATTCATTCAATGTTAAGGTTGCTAGTGATACAAGGTTAACAGCAGAAGATATAGCCACCTCCGTTCAGCAAATACTCAGTTTTATTCATACAAACACTAGCATGTGA 1233 0.3666 MLFCSNFESMQAPSMPSSFNTLDYSIDHHHQQQQQQQYEQLMKYRIGEETSCENNNGIVDYMPQTGGSSFYGSNSFDKLSFADVMQFADFGPKLALNRGEEPGIDPVYFLKFPVLNNKMENQNTMLNNEDCGGGGENNERLKLVNMEEKSREDQREETRVSEENNSVQQMQFNGEQEEIQEEKNCGVQENNKKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRQVGDSSLSTTQQQPPFFPATLPLPNDHDMKLAEMETPGLHEETAESKTCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDMQLLILHTNITTIEQTVLYSFNVKVASDTRLTAEDIATSVQQILSFIHTNTSM 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00950 410 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 259 IPR011598 GO:0046983
Car02g00950 410 PANTHER TRANSCRIPTION FACTOR FAMA 42 410 IPR044283 GO:0003700|GO:0010052
Car02g00950 410 Pfam Helix-loop-helix DNA-binding domain 209 260 IPR011598 GO:0046983
Car02g00950 410 MobiDBLite consensus disorder prediction 146 210 - -
Car02g00950 410 MobiDBLite consensus disorder prediction 146 162 - -
Car02g00950 410 CDD ACT_UUR-ACR-like 336 400 - -
Car02g00950 410 CDD bHLH_AtFAMA_like 211 279 - -
Car02g00950 410 SMART finulus 214 265 IPR011598 GO:0046983
Car02g00950 410 Gene3D - 206 279 IPR036638 GO:0046983
Car02g00950 410 PANTHER TRANSCRIPTION FACTOR FAMA 42 410 - -
Car02g00950 410 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 280 IPR036638 GO:0046983
Car02g00950 410 MobiDBLite consensus disorder prediction 176 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00950 Car-Chr2 16323152 16325636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00950 17 410 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 57.946 3.30e-137 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car02g00950 HLH 8.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00950 - - gmx:100813515 510.375