Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00949 ATGATGAGTCCTCTAATAAGAATCGCGTTAGCAATAAACTTATTGTCTAATTCCCATACCATAAGAATACTCATCAAATACTCTGTTCGCCTTCAAATTCTTCTCAATTGGACATTCAATTTCTTTTCCCTCTATTTGTGTTATCCTTTGTGCAAGCGACAACGTTATGATCAGCAAACTGTATGTAAATATGTGTCCCAACCACAAGAAGATGTAGATTGTGCTGTGTGTCTCTGTAACATGAAAGAAAAGGATGAGATTAGAGTGCTATTGTGTAAACATGTTTTTCATAGAGATTGTTTGGATACTTGGCTTAGATTCAACTTCAACAAAATGAGTTGCCCTCTTTGCAGAATTGCAGTAGGTCCAATAAAAGATGTTGATGCTCAAGTTCTACCTAGCGATTACCGGATACCGTGGTTGCGTTAA 429 0.3683 MMSPLIRIALAINLLSNSHTIRILIKYSVRLQILLNWTFNFFSLYLCYPLCKRQRYDQQTVCKYVSQPQEDVDCAVCLCNMKEKDEIRVLLCKHVFHRDCLDTWLRFNFNKMSCPLCRIAVGPIKDVDAQVLPSDYRIPWLR 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00949 142 SUPERFAMILY RING/U-box 67 124 - -
Car02g00949 142 Pfam Ring finger domain 73 118 IPR001841 -
Car02g00949 142 ProSiteProfiles Zinc finger RING-type profile. 74 118 IPR001841 -
Car02g00949 142 SMART ring_2 74 117 IPR001841 -
Car02g00949 142 PANTHER RING ZINC FINGER PROTEIN-RELATED 52 122 - -
Car02g00949 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 124 IPR013083 -
Car02g00949 142 PANTHER EMB|CAB89405.1-RELATED 52 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00949 Car-Chr2 16259212 16259836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00949 73 121 C3H Transcription Factor Family AT1G15100 56.000 4.46e-13 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00949 - K16282 mtr:MTR_4g077570 119.012