Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00886 ATGGATCTTCTTAGTCAATCATTAGTATGCCAAAAAGAAACTGATAATGGTGATAACATCGAAGAAGGAGGAGGAGATTGTAGTTTAAAGAAAGGTCTTGATAACGGAGACACCGAAGAAGGAGGAGAAGATGGTAGTCTAAAGAAAGGTCCATGGACATTGGCAGAGGATGCAATTTTGGTAGAATACGTTCAAAAGTATGGAGAGGGAAATTGGAGTGCAGTCCAGAAAAATTTTGGACTTACTCGGTGTGGGAAAAGTTGTCGTCTGCGATGGACAAATCATTTAAGACCAGATCTGAAAAAGGACAATCAGATAAAGAACTATTGGCACACAAGGAGTAAGAGATTGAAAAAAGTTGGCTTACCAATCTATCCCGAAGAAGTAGAGCAAACGGAGAAAAAGATAAATCAAGAACACGTCGACATAATAGCCAACCAGCATCGTGAAAATGATTCGCAAACAGTAAACTTAGATATACTTGATGTGGTATTTAAAAGTTTCAAACTTCATCCAGGTGAAACTTTTCTACTACCATCTCTTGATATACAGGGAAGTGGCTTGGTAGATCGAAGTATAGACTTCAATAGTAATAATTTTTTTGTCCCACTAATTGAAAGCTGTAAAAATTACTCTATGTTGTCTTCTCCATGTGATCCATGCACCAACAATCAGTTTCATGATGATTACTTTATGTTGTCTCCTCCATGTGATCCATGCACCAGCAATCAGATTCATGGTCCTCCATGTGATCCATGCACCAACAATCAATTTCATGGATACAATAATTACTCTATGTTGTCTCCTCCATATGATCCATGCACTAGCAATCAGTTTCATGGTCCTCCATGTGATCCATGCATCATAAATCAATTTGATGGATATGATAATTATTCTCCTCCATGTGATCCATGCACAGACAATCAATTTCATGGATATAATAATCTTACTATAAATAGTCATGTCACATTAAACGACAATATATCTTCTTCTGAACCCATAGACGATGGGTCTACTACATATGAGCTCCCTTCATTCCAATGTTTACATACTCGACAATGTAATTTGAACACACCTGCGTCCCGAATTCCTCCACACGAGTTTGTCGAAACAATGATTCAAACACCTCCAATTGAAGAACCTAATAATTCTATTACGGTTTATCTGGATAAAGGTGGTTTACTCAATACAAGATCATTCCACAATGGCTCAAATGTCCAAGAGAGAACATAA 1233 0.3739 MDLLSQSLVCQKETDNGDNIEEGGGDCSLKKGLDNGDTEEGGEDGSLKKGPWTLAEDAILVEYVQKYGEGNWSAVQKNFGLTRCGKSCRLRWTNHLRPDLKKDNQIKNYWHTRSKRLKKVGLPIYPEEVEQTEKKINQEHVDIIANQHRENDSQTVNLDILDVVFKSFKLHPGETFLLPSLDIQGSGLVDRSIDFNSNNFFVPLIESCKNYSMLSSPCDPCTNNQFHDDYFMLSPPCDPCTSNQIHGPPCDPCTNNQFHGYNNYSMLSPPYDPCTSNQFHGPPCDPCIINQFDGYDNYSPPCDPCTDNQFHGYNNLTINSHVTLNDNISSSEPIDDGSTTYELPSFQCLHTRQCNLNTPASRIPPHEFVETMIQTPPIEEPNNSITVYLDKGGLLNTRSFHNGSNVQERT 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00886 410 ProSiteProfiles Myb-like domain profile. 44 96 IPR001005 -
Car02g00886 410 SMART sant 48 98 IPR001005 -
Car02g00886 410 MobiDBLite consensus disorder prediction 15 46 - -
Car02g00886 410 CDD SANT 51 96 IPR001005 -
Car02g00886 410 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 36 102 - -
Car02g00886 410 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 36 102 - -
Car02g00886 410 Pfam Myb-like DNA-binding domain 49 96 IPR001005 -
Car02g00886 410 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 103 375 - -
Car02g00886 410 MobiDBLite consensus disorder prediction 14 49 - -
Car02g00886 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 100 IPR017930 -
Car02g00886 410 Gene3D - 48 102 - -
Car02g00886 410 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 103 375 - -
Car02g00886 410 SUPERFAMILY Homeodomain-like 46 104 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00886 Car-Chr2 13796523 13798948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00886 47 152 MYB Transcription Factor Family AT2G32460 48.571 2.50e-35 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car02g00886 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00886 K09422 - cam:101502589 564.688