Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00882 ATGAAAGCAGGGAAAGTGAACCATGAAGAAGATGAGTACGATGAGGAAGACTTCAATTCCTTGAAGAAACAAGGTTCTTCCTCTGCCCCTAACACCAACAATAAAGATGGAAAAGCTACTGATAAGGCTAGTGTAATAAGATCGAAACATTCTGTAACTGAGCAGCGAAGAAGAAGCAAGATAAATGAGAGATTCCAAATATTGAGGGATCTCATACCTCAATGTGATCAAAAGAGGGACACGGCTTCATTCTTATTAGAGGTGATTGAGTATGTTCAGTACTTACAGGAGAAGGTACAAAAATATGAAGGCTCATATCAAGGTTGGAATCAAGAGACGTCAAAGTTGATGCCATGGAGAAATAGCCATTGGCGTGTCCAAAACATTGTTGGTCAACCTCCAGCTGTAAAGAATGGTTCAGGTCTGGTATCGCCATTTCCCGGAAAGTTTGACGAAAGCAACGTTAGTATCTCTCCAACAATGCTTAGCGGCACTCAGTGTATGATAGAACCTGAACAGAGTCGGGATATTGTCAGCAAGATAGCAGAGAGGCAACCCGATTTAGCAAGCAAGGGAATTCCTCTTCCTATGGCTATGCATGCAAACATGTCCGTTCCTGTCAGAAGCGATGGTGTACTTGCCCATCCTCTTCAGGGAACTGTTTCCGATGCACAATCAACTGAATGTCCCGCGACTAGTGAACAACTGAACCATCAGGATGAACTTACAGTTGAAGGAGGGACAATTAGCATCTCAAGCGTATATTCCCAAGGGTTGTTGAACAATCTAACTCAGGCGCTACAGAGTGCTGGGTTAGATCTGTCACAGGCTAACATTTCAGTTCAAATTGATCTTGGGAAGCGAGCAAACAAAGCACCAAGCGGCACAACCTCTTCCCCCAAGAATCATGATAACCCTGTTTGTAGCAATCAAGCAATTGCACATTTTAGAGATGGTATCATTAGAGAAGACTCAGATCAAGCTCTAAAAAGAATGAAAACATACAAGTGA 1011 0.4273 MKAGKVNHEEDEYDEEDFNSLKKQGSSSAPNTNNKDGKATDKASVIRSKHSVTEQRRRSKINERFQILRDLIPQCDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWNQETSKLMPWRNSHWRVQNIVGQPPAVKNGSGLVSPFPGKFDESNVSISPTMLSGTQCMIEPEQSRDIVSKIAERQPDLASKGIPLPMAMHANMSVPVRSDGVLAHPLQGTVSDAQSTECPATSEQLNHQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQANISVQIDLGKRANKAPSGTTSSPKNHDNPVCSNQAIAHFRDGIIREDSDQALKRMKTYK 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00882 336 MobiDBLite consensus disorder prediction 291 308 - -
Car02g00882 336 MobiDBLite consensus disorder prediction 288 308 - -
Car02g00882 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 116 IPR036638 GO:0046983
Car02g00882 336 SMART finulus 51 101 IPR011598 GO:0046983
Car02g00882 336 MobiDBLite consensus disorder prediction 22 39 - -
Car02g00882 336 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 334 IPR044295 GO:0003700|GO:0006351|GO:0046983
Car02g00882 336 CDD bHLH_AtBIM_like 44 120 - -
Car02g00882 336 PANTHER TRANSCRIPTION FACTOR BIM2 1 334 - -
Car02g00882 336 Gene3D - 30 117 IPR036638 GO:0046983
Car02g00882 336 Pfam Helix-loop-helix DNA-binding domain 47 96 IPR011598 GO:0046983
Car02g00882 336 MobiDBLite consensus disorder prediction 1 58 - -
Car02g00882 336 MobiDBLite consensus disorder prediction 40 58 - -
Car02g00882 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 95 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00882 Car-Chr2 13679140 13683084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00882 1 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 54.192 1.86e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car02g00882 HLH 2.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00882 - - gmx:100816055 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00882 02 13679140 13683084 Car02g00882 02 13679140 13683084 ECH