Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00866 ATGGAATCTTGGAGTTACATCCCTGAAGAGAGAAGCTATTTGTTTTCTGATGAAATGGACTTTTCACTTGATGCTTTTATGATGAGAAGTAGAAAACCATTTATTGAATTTGAGAACAAATCGTCCTGTAACTTTGAGAGAGATTCGACTTTTGGAGAAGAAGATTCTGATTCAAAGCATTTAAGTTCTCTAGATGAATCGAAAACTCATGATTCTTCATTGATTGATCTTAAGCTAGGTAGATTAGACAGAGATGTGAAAGCATTCACTTCTACGCCGATACATCAAACCGCACTTTCCAAGAAAGCTCGCACTTCTAGATTACCGGCTCATGCTCCTATATGCCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAAGATTACCACAAAAGACATAAAGTTTGTGATGTTCATTCCAAGACGGCTAAAGTTATTGTGAATGGCGTTGAACAGAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGCTAGCTGAGTTCGATGATGGTAAGCGCAGTTGTCGCAGGCGTCTAGCTGGACACAATGAACGCCGAAGGAAACCTCAGTTTGATTACATGACTAATAAACAACACAAGATTCTTCAGTCATATCAAGGTACTAAGTATCTCGAATCTTCAATACAAAACATACCTCACTTTGATTTTCAAGATATATTTCAAAGTGGACATATCAAACTGGAAGAGGAGCCAAATTTCAGTCCTCAACTAGCATCACCCGCCACACTCGGTCACGAGTTATCTAGCCGTGCTCTCTCTCTTCTGTCATCCCCGTCACAGAATCCATCGCGCCACGCAGCAGAAAATCCATTAACTAACTCCCTAATTTATCGGGGCATCCGCACGCAAGATAACAATGACCAAGTTTCTGAAACACCATTGAATATAAGCTCTGTGGATAAACATAATCAAAATGAGTCTTTTCCATTTTCTGATGATATTTGTGAAACATCAGAATCAATGAATATCAAATCTGAACATGGAGTCACTGTTGATCTGTTTCAATTGTCTTCTCATCTTCAAAGAGTGGAGCAGCAAAGAAATTCTGTTTTGGTAAAATGGGAATGA 1089 0.3912 MESWSYIPEERSYLFSDEMDFSLDAFMMRSRKPFIEFENKSSCNFERDSTFGEEDSDSKHLSSLDESKTHDSSLIDLKLGRLDRDVKAFTSTPIHQTALSKKARTSRLPAHAPICQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGVEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTNKQHKILQSYQGTKYLESSIQNIPHFDFQDIFQSGHIKLEEEPNFSPQLASPATLGHELSSRALSLLSSPSQNPSRHAAENPLTNSLIYRGIRTQDNNDQVSETPLNISSVDKHNQNESFPFSDDICETSESMNIKSEHGVTVDLFQLSSHLQRVEQQRNSVLVKWE 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00866 362 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 251 362 IPR044817 GO:0003677
Car02g00866 362 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 244 IPR044817 GO:0003677
Car02g00866 362 Pfam SBP domain 115 188 IPR004333 GO:0003677
Car02g00866 362 Gene3D - 108 176 IPR036893 GO:0003677|GO:0005634
Car02g00866 362 ProSiteProfiles Zinc finger SBP-type profile. 112 189 IPR004333 GO:0003677
Car02g00866 362 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 251 362 - -
Car02g00866 362 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 43 244 - -
Car02g00866 362 SUPERFAMILY SBT domain 113 195 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00866 Car-Chr2 13066342 13071399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00866 1 355 SBP-box Gene Family AT1G69170 40.049 1.77e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Car02g00866 SBP 6.4e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00866 02 13066342 13071399 Car02g00866 02 13066342 13071399 ECH