Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00856 ATGGCGATGATTCAAGGTGTGCAAAAGAACACCCTATACGTCGGAGGTTTAGCGGAGGAAGTCAACGAATCCATCCTTCATGCGGCATTCATACCCTTCGGTGACATCAAAGACGTCAAAACCCCACTCGATCAAGCCACTCAGAAGCATCGCTCCTTTGGCTTCGTCACTTTCCTCGAGAGGGAAGACGCTTCCGCCGCCATGGATAATATGGACGGTGCCGAACTCTACGGTCGTGTCCTTACCGTTAATTACGCCCTTCCTGAACGCATTAAGGGTGGTGAACAAGGCTGGGCTGCTCAACCAATTTGGGCGGATGCGGATACTTGGTTTGAGCGGCAGCAACAAGAGGAGGACATGCGTCGTCTTGAAGCAGAGAATAAAGCTGCAATGCAGGCTGCTGAAGAACTGCATAGGAAGCAAGTAGCCCAAGAGCGAGAAGGAGAGAAAGAAGAGGAAAGTGAGATCAAGGATGATCCTATGGCAAGGGCTGAAGCAGAGGTTGTTCAATAG 513 0.5088 MAMIQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEDMRRLEAENKAAMQAAEELHRKQVAQEREGEKEEESEIKDDPMARAEAEVVQ 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00856 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Car02g00856 170 SMART rrm1_1 11 84 IPR000504 GO:0003723
Car02g00856 170 Coils Coil 113 140 - -
Car02g00856 170 MobiDBLite consensus disorder prediction 129 170 - -
Car02g00856 170 Gene3D - 4 155 IPR012677 -
Car02g00856 170 PANTHER TRANSFORMER-2-RELATED 5 169 - -
Car02g00856 170 CDD RRM_PPIE 12 84 IPR034168 GO:0003723
Car02g00856 170 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E 5 169 - -
Car02g00856 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Car02g00856 170 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00856 Car-Chr2 12634634 12636710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00856 10 88 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 2.57e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00856 - - gmx:100809447 315.464