Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00838 ATGTCCATTGATAAAGTTTTGAGGTTTGTTAATTACAGAAGATTCTCCTCCACACCTGAAATCCCCTCTCTTTATTCCTTCCTTCAACCAACTTTGTTTTCTCTCAACAAACCCAATTTTGAAGAACCCCAAAATCTCCCAACTCCAACACCAAAGTCACTCTCCCTGACACCTCACCAAATTAGCAGTCTCGAAACAACACTCCACAAATCACTCCTCACTACTCAAACAGATGAAGCTTGGAAATCATTCAAAACACTCACTACCCACAATTCCTTCCCATCTAAACCCCTCACCAATTCCCTTCTCACTCACTTATCCTCTCTCGCTGATATTCACAATCTCAAAAGAGCTTTCGCTTCCACTCTCTTTCTCATCCAAAAAAACCCTAACATTCTCCATTCTCAAACTATCCATACCATTCTTCTTTCCATGAAATCTGCCAACACTGCTTCCCCTGCTTTTTCACTTGTCACCTCTCTCTTCCGTAACAGATTTTTCATCCCTTTCCACTCGTGGGGCCCTGTTCTCGTTGATATTGCCAGGAACAATAACAACCTTGCTGCTTTTTTGCCTCTTTTTGAACATAATTGCAGGGTTGCTTCCGATGAGAAGCTTGATTTCATGATACCTGATGTTTCTGCTTGTAATGCTGCTCTTGAAGCTTGCTGTTTTCACCTCCAATCCGTTACCGATGCTGACAGAGTCGTTGGAATTATGTCCAATCTTCGTGTTAAACCTGATGAGTTTAGTTTTGGATTTTTAGCTTATTTATATGCGCTTAAAGAATTACAAGATAAGATAGATGAGTTAAAAGTTTTGATGGGTGATTTTGGTTATTCAAACAATAAATGCTTTTATTCTAATTTGATTAGTGGCTACGTTAAGTCTGGTAATTTAGCTTCTGCGGAGTTAACTATTCTCAGTAGTTTGAATGATAGAGATGGGGAATATTGGAATTTTGATAGAGACACTTTTTGTGTTCTAGTTAAGGAATATCTTCAGAAGGGGAATGTTAAGGGTTTAGCTAATTTGATTATTGAAGCTCAGAAGTTAGAGACTTCAAATATCAAAGTTGATGACTCTATAGGTTTTGGAATTGTTAGTGCATGTGTTAGTATTGGACTATCGGATAAAGCACATAGTATTCTTGATGAAATGAATGCTTTGGGAGGCTCTGTGGGTCTTGGTGTCTATGTACCTATTTTGAAAGCTTACTGTAAAGAAAATCGAACTGCTGAGGCTACTCTATTGGTGATGGAGATTAGTAGTTCAGGTCTTCGGTTGGATATGGCAACCTATGATGCTCTGATAGAAACGTCCATGTCCGGTCAAGACTTCCAATCGGCCTTTTCGTTGTTTAGGGACATGAGAGAGGCGAGGATTCCTGATTTGAAAGGGAGTTACTTAACTATGATGACGGGTTTGATGGAGAACCATCGACCTGAGTTGATGGCAGCTTTCTTAGATGAGGTGGTTGAGGATCCTCGTATTGAAGTAGGTACTCATGATTGGAATTCTATAATTCATGCTTTTTGTAAATCCGGGAGACTGGAAGATGCAAGAAGGACTTTCAGAAGGATGATGTTCCTGCAATTTGAGCCTAATGATCAGACATACTTGTCGCTGATTAATGGATATGTTTCGGCAGAGAAATATTTTGATGTGATGATGCTGTGGAATGAGGTTAAGCGCAAGTTACCGGTGGATGGGCAGAAGGGGGTCAAATTTGACCAGAATCTAGTCGATGCATTCCTTTATGCTATGGTGAAGGGTGGTTTTTTTGATGCTGTGATGCAAGTTGTGGAGAAATCTAAAGAGATGAAAATATTTGTTGATAAGTGGAGATACAAGCAAGCATTCATGGAAACTCATAAAAAGCTCAAAATTGCCAGGTTAAGAAAAAAGAATTTCAGAAAAATGGAAGCGCTTATTGCTTTCAAGAATTGGGCTGGCTTAAATGCATGA 1968 0.3938 MSIDKVLRFVNYRRFSSTPEIPSLYSFLQPTLFSLNKPNFEEPQNLPTPTPKSLSLTPHQISSLETTLHKSLLTTQTDEAWKSFKTLTTHNSFPSKPLTNSLLTHLSSLADIHNLKRAFASTLFLIQKNPNILHSQTIHTILLSMKSANTASPAFSLVTSLFRNRFFIPFHSWGPVLVDIARNNNNLAAFLPLFEHNCRVASDEKLDFMIPDVSACNAALEACCFHLQSVTDADRVVGIMSNLRVKPDEFSFGFLAYLYALKELQDKIDELKVLMGDFGYSNNKCFYSNLISGYVKSGNLASAELTILSSLNDRDGEYWNFDRDTFCVLVKEYLQKGNVKGLANLIIEAQKLETSNIKVDDSIGFGIVSACVSIGLSDKAHSILDEMNALGGSVGLGVYVPILKAYCKENRTAEATLLVMEISSSGLRLDMATYDALIETSMSGQDFQSAFSLFRDMREARIPDLKGSYLTMMTGLMENHRPELMAAFLDEVVEDPRIEVGTHDWNSIIHAFCKSGRLEDARRTFRRMMFLQFEPNDQTYLSLINGYVSAEKYFDVMMLWNEVKRKLPVDGQKGVKFDQNLVDAFLYAMVKGGFFDAVMQVVEKSKEMKIFVDKWRYKQAFMETHKKLKIARLRKKNFRKMEALIAFKNWAGLNA 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00838 655 Pfam PPR repeat 368 389 IPR002885 -
Car02g00838 655 Pfam PPR repeat 287 304 IPR002885 -
Car02g00838 655 Gene3D Tetratricopeptide repeat domain 367 463 IPR011990 GO:0005515
Car02g00838 655 Gene3D Tetratricopeptide repeat domain 178 364 IPR011990 GO:0005515
Car02g00838 655 TIGRFAM PPR: pentatricopeptide repeat domain 505 536 IPR002885 -
Car02g00838 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Car02g00838 655 Pfam PPR repeat family 505 548 IPR002885 -
Car02g00838 655 Gene3D Tetratricopeptide repeat domain 464 621 IPR011990 GO:0005515
Car02g00838 655 Pfam Pentatricopeptide repeat domain 418 462 IPR002885 -
Car02g00838 655 PANTHER OS01G0788900 PROTEIN 8 655 - -
Car02g00838 655 PANTHER BNAC05G43320D PROTEIN 8 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00838 Car-Chr2 12318988 12320955 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00838 244 566 Miscellaneous Gene Families AT4G11690 23.795 5.36e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00838 - - mtr:MTR_5g044930 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00838 02 12318988 12320955 Car02g00838 02 12318988 12320955 ECH