Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00813 ATGGAAGAGAAAAAGTTTGTGTGTAAGTTTTGTAGTAGAAAGTTTGCTTGTGGTAAGTCTCTTGGTGGTCACATTAGGACTCATATGATGAATGAACATAATTCAGTTAAAGCTAATGAAGAAAAAAGAATCaatgctaattccaattttaatgttagtgttaatgttaatggtaatggtaatgctatgtttaagttTGATGATGGGAGAAAGAGGAAAAGGGATTTTGGGTCTAgtagtggtggtgttggtggtgatgatgTTATTTATGGTTTGAGAGAGAATCCCAAAAAAACTACAAGATTTGTGCATTCCAATGTTGCTGCTACTATTCAAATGGAGAAATTCTGCAAAGAATGTGGGAAAGGTTTTCCATCATTGAAAGCTCTGTGTGGTCACATGGCTTGTCATTCAGAGAAAGACAAAGGAATCAATAGGATTGTTGAGAGTAGTTCTGAAAAGCAGAAATTGGTTATGGATAGTCAATCTGATACCGAGACATCGGTTCAGACGCGAAGATCGAAGAGAATGAAGTTCAAGAATGTTGGCAGTGGTGGTGGCAGTAACAACAATCATCAACCTTCTTCTTCTTCTCTTCATTGGGGGAATTGTTCTTCTTCAGTTTCTGAGGTTGAGCAGGAACAAGAAGATGTTGCTTTGTGTTTGATGATGCTGTCTAGAGATTCTACCTATAAGGGACGTTTTGCTTTGGTGACTGAGTCTTCTGATAACAATTCTGTTGTCCTCGAAGCGAAATCGCCTTCTGTTGATACTAAGTTTGCTGTGAATCGCGGTAAGAACAAGGCTTTTGAGGTTGTGGAGAAGAAGCTGAACAAGGATGTGAAATTGAAGTCTGTTGGAATTGGTTATGTTTCTGATAATTCTAATTCTGAGGATTTCAATTATGGTCCTAAAAAAGTAGACTCAGATGAATCAAGTGATGATTTTTTCATGAATGAGAAGAAGTCTAAAAAAGTTGGGTTTGGAGAACATGAATATGAATCAAGCAAGAAGATAATGAGCAGAGAAAGAAGTAAAAACAGTAATGAATTCAAGAAACTGGTTTTGGATGATTCTGTTGGTAAAATTTTAGTTGGTAGTTCTAGCATGAAAAATGGTTATAGTAATGATGAAATGTATGATGAGAATGGTGGAAAAGAATTGAAAATTGAAAGAGAGAGTTTTTCTTCATCTGATGATTCAGCTTATGAGAGTGATGAAAACAGCACTGATAGTGATTCATATCAAGCTCCAAAGACTCAAACAAATAAGAACTTAATTGGAAAAAAGACTAAGTATACAAGCAAGAAGGGAAAGAAGAAAATGAAGTCAAAGAAAAGTAAAGAACATGAGTGTCCAATTTGCAACAAGATTTTCAAGTCAGGACAAGCTTTAGGAGGTCACAAAAGATCCCATTTTGTTGGAGGTTCTGATGACACTCTTGTGATTAGACCCAgtggtggtggtggtggtagtggtggtggtcgtgctcgtgctcctcctgttgcacaggctcCTCCTGTTCCATGTTTCATTGATCTTAATCTACCTGCTCCAGTTGATGAATAA 1569 0.3276 MEEKKFVCKFCSRKFACGKSLGGHIRTHMMNEHNSVKANEEKRINANSNFNVSVNVNGNGNAMFKFDDGRKRKRDFGSSSGGVGGDDVIYGLRENPKKTTRFVHSNVAATIQMEKFCKECGKGFPSLKALCGHMACHSEKDKGINRIVESSSEKQKLVMDSQSDTETSVQTRRSKRMKFKNVGSGGGSNNNHQPSSSSLHWGNCSSSVSEVEQEQEDVALCLMMLSRDSTYKGRFALVTESSDNNSVVLEAKSPSVDTKFAVNRGKNKAFEVVEKKLNKDVKLKSVGIGYVSDNSNSEDFNYGPKKVDSDESSDDFFMNEKKSKKVGFGEHEYESSKKIMSRERSKNSNEFKKLVLDDSVGKILVGSSSMKNGYSNDEMYDENGGKELKIERESFSSSDDSAYESDENSTDSDSYQAPKTQTNKNLIGKKTKYTSKKGKKKMKSKKSKEHECPICNKIFKSGQALGGHKRSHFVGGSDDTLVIRPSGGGGGSGGGRARAPPVAQAPPVPCFIDLNLPAPVDE 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00813 522 Pfam C2H2-type zinc finger 450 472 - -
Car02g00813 522 Pfam C2H2-type zinc finger 117 139 - -
Car02g00813 522 Pfam C2H2-type zinc finger 6 29 - -
Car02g00813 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Car02g00813 522 MobiDBLite consensus disorder prediction 430 446 - -
Car02g00813 522 ProSitePatterns Zinc finger C2H2 type domain signature. 452 472 IPR013087 -
Car02g00813 522 MobiDBLite consensus disorder prediction 152 168 - -
Car02g00813 522 MobiDBLite consensus disorder prediction 152 203 - -
Car02g00813 522 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Car02g00813 522 MobiDBLite consensus disorder prediction 366 449 - -
Car02g00813 522 SMART c2h2final6 115 137 IPR013087 -
Car02g00813 522 SMART c2h2final6 450 472 IPR013087 -
Car02g00813 522 SMART c2h2final6 6 28 IPR013087 -
Car02g00813 522 MobiDBLite consensus disorder prediction 475 507 - -
Car02g00813 522 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 522 - -
Car02g00813 522 MobiDBLite consensus disorder prediction 408 429 - -
Car02g00813 522 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Car02g00813 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 450 472 IPR013087 -
Car02g00813 522 SUPERFAMILY beta-beta-alpha zinc fingers 116 472 IPR036236 -
Car02g00813 522 Gene3D Classic Zinc Finger 1 60 - -
Car02g00813 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 142 IPR013087 -
Car02g00813 522 MobiDBLite consensus disorder prediction 380 399 - -
Car02g00813 522 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 522 - -
Car02g00813 522 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
Car02g00813 522 MobiDBLite consensus disorder prediction 183 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00813 Car-Chr2 11618224 11620446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00813 1 522 C2H2 Transcription Factor Family AT1G26610 39.377 2.23e-77 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car02g00813 zf-C2H2_6 0.0044 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00813 - - cam:101498129 936.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00813 02 11618224 11620446 Car02g00813 02 11618224 11620446 ECH