Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00802 ATGGGGCGTGCAAAAGTAGCCATAAAAAACATCAATAATGAAAAAGTTCGCAAAATAACTTTTATGAATAGAAAAAACGGATTAACAAAAAAAATTTCTGATTTTTCTATCAAGTCTGGAGCCAAAGCTTGCTTGATTGTGTATGATGGTGATGGTAATGTTGCGCCAACAATATGGCCACAAGACCCTACACTTGTAAACTCAATGCTTCAAGAATATGAGAATCAAAAGATTGGAACATCTCCTAAGATTTTTGATATCAAAGACTACTTCAAAATTAAGAAGGAAATCGTTGAAGCTGAAATTTTAAAAGTGAAAAAAGCTATATCGAGGAACAAGTTTCCAACTTGGGATCCATCTTTCAATAACATGCAAGTGGAGCATCTTACAACTTTCATGGAAACTATAAATGCTAAGGTTCAAGATTGTAATGAAAAAATAAACATGATGAAAAATATCCAAGAAATTGAAACTAATTTCTTGCATAACACATCTCACATGCAAAATATGGTTCCAGAGAGTGTTGACTCCTCAAATTCAAGCCAAATCAATGTCATTCAAAGCATCCCTCAAATGGAACAATACATCCATGATCCTATGGAATTACCACTTGATGATGTTTATGAGATGGTGGATTTAACTAATGACGTTGATTTGCCTCCAAATTCATCAACAAACCAACTTTGTCAACTTGTGGAGTGTGATGATTTAGAGGTTAAGCCTATTAATGTTTGTCAACTTGTGGAGTGTGATGATCTAGAGGTTAAGCCTATTAATGTTTGTCAACTTGTGGAGTGTGATGATTTAGAGGTTAAGCCTATTAATGAACGAGTCAATCAATTTGCTGATGTTGATGATTGGACCAATCAACTTGACGATGATATTTTGAATTGGATTCGTCAACCTGATCAGTTTTCTTGGAAAGATATTTCCTTTTTACCTCCAAGTGAGCATGAAAGTGCAAGTTTGAATGCATTGACCCAACCAAAATATGGTTTTTAA 1002 0.3413 MGRAKVAIKNINNEKVRKITFMNRKNGLTKKISDFSIKSGAKACLIVYDGDGNVAPTIWPQDPTLVNSMLQEYENQKIGTSPKIFDIKDYFKIKKEIVEAEILKVKKAISRNKFPTWDPSFNNMQVEHLTTFMETINAKVQDCNEKINMMKNIQEIETNFLHNTSHMQNMVPESVDSSNSSQINVIQSIPQMEQYIHDPMELPLDDVYEMVDLTNDVDLPPNSSTNQLCQLVECDDLEVKPINVCQLVECDDLEVKPINVCQLVECDDLEVKPINERVNQFADVDDWTNQLDDDILNWIRQPDQFSWKDISFLPPSEHESASLNALTQPKYGF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00802 333 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car02g00802 333 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car02g00802 333 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Car02g00802 333 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Car02g00802 333 CDD MADS_SRF_like 2 74 IPR033897 GO:0000981|GO:0000987|GO:0045944
Car02g00802 333 PANTHER PROTEIN, PUTATIVE-RELATED 3 247 - -
Car02g00802 333 PANTHER MADS BOX PROTEIN 3 247 - -
Car02g00802 333 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Car02g00802 333 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Car02g00802 333 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00802 Car-Chr2 11469812 11472046 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00802 1 146 Type I MADS-box Gene Family AT5G55690 31.126 1.80e-16 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car02g00802 SRF-TF 1.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00802 - - cam:101509886 656.751