Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00770 ATGAGTACTAGGAGGCCATGTTGTGAGAAGGTAGGGTTGAAGAAAGGACCATGGACATCAAAAGAAGACAAAAAGCTTATACCATATGTTACTACTCAACATGGCCATCAAAACTGGCCTTCTTTGCCCGCCAGAGCAGGTCTTCAAAGATGTGGGAAGAGTTGTGGACTGAGGTGGATTAACTATCTAAAACCTTATATGAAACGAGGAAACTTCAGCTTGGAGGAAGATCACACTATTATTCAATTGCATGATCTTCTTGGGAACAAATGGTCAACAATAGCAACTCTCCTACCAAAGAGAACAGACAATGATATAAAGAATCATTGTAATACTAACAACAAAAAGGACAAAAATGTCAATGTTATCAAACACATGGCTCAATGGGTGAGTGTTAGATTGGAAGCTGAATCAAGATTATCAAATTTATCAATATCATCACTATCAAACAAGAACAACAACAATGCAATGTATAACTCTTGTTCTATCATGCTTGCAATTGATCATGATGATCCTCTTTCTCCAATATCCAAATTGAACTTTCATAGTATTGAGCTTCATGTTCCTACCAATAATGAGTTGTGTTCACTATCATATGAGAGTGATCATAGTGATAGTAATATGATGGAAACTACTAATGGTGAAGAGATCATGGATGGCTATGTTTTGCAAGATGATGATGATATAATGGAAGCATTTAGAGATCATTCCTTCAATGGTCACACTATCATGGAATTCAATGGAAATGGAAAGGGTAATTTGGATACTAGCATTTCATTTTTGAAATAA 789 0.3574 MSTRRPCCEKVGLKKGPWTSKEDKKLIPYVTTQHGHQNWPSLPARAGLQRCGKSCGLRWINYLKPYMKRGNFSLEEDHTIIQLHDLLGNKWSTIATLLPKRTDNDIKNHCNTNNKKDKNVNVIKHMAQWVSVRLEAESRLSNLSISSLSNKNNNNAMYNSCSIMLAIDHDDPLSPISKLNFHSIELHVPTNNELCSLSYESDHSDSNMMETTNGEEIMDGYVLQDDDDIMEAFRDHSFNGHTIMEFNGNGKGNLDTSISFLK 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00770 262 CDD SANT 71 113 IPR001005 -
Car02g00770 262 Gene3D - 14 68 - -
Car02g00770 262 CDD SANT 17 63 IPR001005 -
Car02g00770 262 Pfam Myb-like DNA-binding domain 15 63 IPR001005 -
Car02g00770 262 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Car02g00770 262 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 116 - -
Car02g00770 262 PANTHER TRANSCRIPTION FACTOR MYB106 3 116 - -
Car02g00770 262 ProSiteProfiles Myb-like domain profile. 10 63 IPR001005 -
Car02g00770 262 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Car02g00770 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
Car02g00770 262 Gene3D - 70 139 - -
Car02g00770 262 SMART sant 14 65 IPR001005 -
Car02g00770 262 SMART sant 68 116 IPR001005 -
Car02g00770 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Car02g00770 262 ProSiteProfiles Myb-like domain profile. 64 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00770 Car-Chr2 10758472 10762280 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00770 4 162 MYB Transcription Factor Family AT3G01140 52.432 1.14e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car02g00770 Myb_DNA-binding 4.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00770 K09422 - gmx:100792464 211.46