Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00760 ATGTGTAGGATGGGGAGGGTAAAGTTAAAGATTAAGAGGTTGGAAAACACCAATGGACGCCAAGCAACCTATGCCAAAAGGAAGAATGGAATCATGAAGAAAGCTAGTGAattatctatattatgtgatattgatattataCTTCTCATGTTTTCACCAGGTGGAAAACCTTCGTTATGTAGAGGGAGACGCAGCAACTTTGAGGAGGTGATAGCAAAGTTTGCTCAACTAACCTCACAAGAAAGGGCAAAGAGGAAGTTGGAGAGTCTTGAAGCACTAAAGAAAACATTTAAGAAGTTAGATCATGATGTGAATATACAAGAATTTTATGGTACAAGTAGTCAAACTGTTGAGGATTTGAGTAATCAAACCAAGCTATTACATAATCGAATCGCTGAAATACAAGAGAGACTAAGCCATTGGACTGAAATTGAAAAAATTAGTAGTGTGGATGAATTGGAACACATGGAAAATTCACTCAAGGAGTCTCTTAATCAAATTAATTCTCACAAGGAAAATGTACAAAAGCAACAATTGGCATCATTGCAATGCAATAATCAGTTCAATGAAATGCATGTTCCCTACAAAATGAGTGCTCAACAACATCTTCAATCTATTTCATGGATGGTTAATGGTGATAACCAGAACATAGTAATGCCTGAAGATTCAAACTTGCTTCTCCACAAAGATGTAGAAGGCTCAACAAGTTCATCTTTTGGGAGTTATGCAAGTTACCTTGGCTCAAGCACAAAAACAAACAATATTTCAAATTCTGGTCAAGAAAATTGTGTCCTTAGTGACATGAGCAATACAGCACCAGTAAGGCTACAATTCAATGGACAATTTCCATACATTCCAAACAATTTCAACATAATGAATGATGTGAAGCTCCAACCAACTACAGGGATTAATAATAATAATCCACATGAAAACCAAGTAGATTATAATGTGAATGGTAACATTAATGAAGCACCTAAACAAGGGTTTGATCAATCCAATCACCATGGATGGAGTTCTGCTTCAGGGCCTTGTGCTGTTAATATCTTTGATGAACATTTGTATCATGCACAACCAAATTTTCCACAAGTGCATTTTGGATTCACATAG 1107 0.3559 MCRMGRVKLKIKRLENTNGRQATYAKRKNGIMKKASELSILCDIDIILLMFSPGGKPSLCRGRRSNFEEVIAKFAQLTSQERAKRKLESLEALKKTFKKLDHDVNIQEFYGTSSQTVEDLSNQTKLLHNRIAEIQERLSHWTEIEKISSVDELEHMENSLKESLNQINSHKENVQKQQLASLQCNNQFNEMHVPYKMSAQQHLQSISWMVNGDNQNIVMPEDSNLLLHKDVEGSTSSSFGSYASYLGSSTKTNNISNSGQENCVLSDMSNTAPVRLQFNGQFPYIPNNFNIMNDVKLQPTTGINNNNPHENQVDYNVNGNINEAPKQGFDQSNHHGWSSASGPCAVNIFDEHLYHAQPNFPQVHFGFT 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00760 368 Coils Coil 153 180 - -
Car02g00760 368 SUPERFAMILY SRF-like 5 98 IPR036879 GO:0003677|GO:0046983
Car02g00760 368 Gene3D - 17 100 IPR036879 GO:0003677|GO:0046983
Car02g00760 368 PRINTS MADS domain signature 26 41 IPR002100 GO:0003677|GO:0046983
Car02g00760 368 PRINTS MADS domain signature 41 62 IPR002100 GO:0003677|GO:0046983
Car02g00760 368 PRINTS MADS domain signature 6 26 IPR002100 GO:0003677|GO:0046983
Car02g00760 368 CDD MADS 5 57 - -
Car02g00760 368 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 57 IPR002100 GO:0003677|GO:0046983
Car02g00760 368 Coils Coil 80 100 - -
Car02g00760 368 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 4 357 - -
Car02g00760 368 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 357 - -
Car02g00760 368 Coils Coil 117 137 - -
Car02g00760 368 ProSiteProfiles MADS-box domain profile. 4 56 IPR002100 GO:0003677|GO:0046983
Car02g00760 368 SMART madsneu2 4 63 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00760 Car-Chr2 10544971 10550778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00760 4 359 Type I MADS-box Gene Family AT2G03060 47.656 3.12e-96 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car02g00760 SRF-TF 1.9e-18 No_clan