Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00758 ATGACTACCAACAACAAATACCctttttcttcttctctttcttcatcttcttcttcttctATGGGAATGGTATATGAAGACCTTGGAGTTGGATCTCTCTCTCTTAACTCAAACTATGCTGTCAGTTTTCCATTTATGAGAGACTGTCTTTCTAAAAGATTTGAAGAAGAAGATGATATGGAAGGTAAAGGTTGTGATTGTAGTGATGGAAATTACCACAATGAAGACTTGGAGAACCCtaatgacaataataataacaataataataataatGGTAGTGGGAAAGAGGAAGATAATGGACAGTCTAGTAAATGTGCTAGAGGTCATTGGAGACCTGCTGAAGATTCCAAGCTTAAGGAACTTGTTGCTCTTTATGGTCCTCAAAATTGGAACCTCATAGCTGAAAAGTTGGAAGGAAGATCAGGGAAGAGTTGTAGGTTAAGATGGTTCAACCAATTAGATCCAAGAATCAATAGAAGAGCATTTAGTGAAGAAGAGGAAGAAAGACTAATGCAAGCACATAGAATTTATGGAAACAAATGGGCCATGATAGCTAGACTATTTCCAGGAAGAACAGATAATGCTGTAAAGAATCATTGGCATGTTATAATGGCAAGAAAGTACAGAGAACAATCTAGTGCTTACAGAAGAAGAAGATTAAGCCAACCTGTTTACAGAAGAATGGATCAAAATCATCAAAGCTTTGTCTACAAAGAAAACACAAATATTGAAACAGAATCATATTCATCACATTGTTTTCTCAATGGAGCCCCACTTGGTAATAGTGTGTCTATTTTTCCATATGGTGCTTCCTTCCAACATGGTGGTCATGGTGGTGGGGTTGAATATGGTTTAAATGTTTCACCTCACTTGAGTGGTGAGAGAGAACCAATGCAAGGACCCCTACATGTTGGTTTCTATTCTCAACAAGCACCATTTGATTTTTTCTCTGGTGGTGGTAGAAGCAATATTAACATGGTGGAAGATTCTTTCAATCATTATTATCATCATCAACAACAACAACAAGAGCTATCTAATTTCTACCATCATTATCCACAACAATATTTGATGACAATGCAACAACAAAACAATTACAATTTCACAAATTCATCATCAACAGCATCGAGAAATATTGGAGAAAACAATGAAAAAGTGATGATGATTAATGAGAAGGCAGATTGTGTTGAAGAAACTCCTCCTCAATTTTTTGACTTCCTTGGAGTAGGTGCTACAACAACAAGAACATGA 1248 0.3478 MTTNNKYPFSSSLSSSSSSSMGMVYEDLGVGSLSLNSNYAVSFPFMRDCLSKRFEEEDDMEGKGCDCSDGNYHNEDLENPNDNNNNNNNNNGSGKEEDNGQSSKCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQPVYRRMDQNHQSFVYKENTNIETESYSSHCFLNGAPLGNSVSIFPYGASFQHGGHGGGVEYGLNVSPHLSGEREPMQGPLHVGFYSQQAPFDFFSGGGRSNINMVEDSFNHYYHHQQQQQELSNFYHHYPQQYLMTMQQQNNYNFTNSSSTASRNIGENNEKVMMINEKADCVEETPPQFFDFLGVGATTTRT 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00758 415 PANTHER MYB TRANSCRIPTION FACTOR 24 411 - -
Car02g00758 415 SMART sant 106 155 IPR001005 -
Car02g00758 415 SMART sant 158 206 IPR001005 -
Car02g00758 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Car02g00758 415 CDD SANT 161 201 IPR001005 -
Car02g00758 415 Gene3D - 160 229 - -
Car02g00758 415 ProSiteProfiles Myb-like domain profile. 154 204 IPR001005 -
Car02g00758 415 MobiDBLite consensus disorder prediction 77 99 - -
Car02g00758 415 Pfam Myb-like DNA-binding domain 107 153 IPR001005 -
Car02g00758 415 Pfam Myb-like DNA-binding domain 159 202 IPR001005 -
Car02g00758 415 MobiDBLite consensus disorder prediction 74 109 - -
Car02g00758 415 ProSiteProfiles Myb-like domain profile. 102 153 IPR001005 -
Car02g00758 415 SUPERFAMILY Homeodomain-like 106 200 IPR009057 -
Car02g00758 415 Gene3D - 107 158 - -
Car02g00758 415 MobiDBLite consensus disorder prediction 1 21 - -
Car02g00758 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 208 IPR017930 -
Car02g00758 415 CDD SANT 110 151 IPR001005 -
Car02g00758 415 PANTHER MYB PROTEIN-RELATED 24 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00758 Car-Chr2 10497994 10500163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00758 73 324 MYB Transcription Factor Family AT1G69560 53.543 1.19e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car02g00758 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00758 K09422 - gmx:100789305 382.874